PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G076272_P01 | ||||||||
Common Name | LOC100274028, ZEAMMB73_643457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 491aa MW: 52469.6 Da PI: 7.566 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.4e-09 | 430 | 468 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +Fe+ +yp +e+e LA++ gL+ +qV++WF N R + GRMZM2G076272_P01 430 MFENflRPYPRDKEKEMLAARSGLSRSQVSNWFINARVR 468 57766689*****************************88 PP | |||||||
2 | BELL | 20.9 | 8.7e-08 | 300 | 365 | 9 | 72 |
BELL 9 kakLlslleeVdkrYkqyveqlqtvissFeava..glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 k+ +ll+ +d+r kq+ +++q +s + + g g ++ t +A++a+S +r L+ +i++ i GRMZM2G076272_P01 300 KNDFQKLLQIMDQRCKQCLDEIQNAASKYGSLVrpGGGGGALSTLFAQRAVSATHRRLRARITGEI 365 555667899999*****************9987567778899********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 8.4E-15 | 236 | 362 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 409 | 472 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 411 | 485 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.84E-16 | 412 | 481 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-7 | 412 | 476 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.77E-12 | 412 | 473 | No hit | No description |
Pfam | PF05920 | 1.1E-15 | 429 | 468 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009066 | anatomy | anther | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MTGNASYQHL GLGVDATMRS CFASGDGSVI SSADAPFFHV PEYTLHGGGG FGFGEPAADV 60 AASSFLADGS VLLAGQLLRA TALQSVSPEE RHGAYYGVTG GSSSYGPSPW DVTVAHAPSR 120 MTKQPVAGEP EGGWIHESSY YCPATWFSGD GFRDPFAGAA ASELSLRLRA GSSPTAGAAS 180 VSLPDQSSEV SCSGLTHWSS GGGPGMFQLP CGGAGQVAVA ARPGPMHFSQ VLSRWSGYAD 240 VTQQVLDEFV IRLLQDVAGF AGGGEASCPL PSSSYCSKTT SSNPNPSVFV SSEEHHNELK 300 NDFQKLLQIM DQRCKQCLDE IQNAASKYGS LVRPGGGGGA LSTLFAQRAV SATHRRLRAR 360 ITGEIAAATR GGNQPSSSSS LSLADRERSW ESAFIQKHWA LRQLRRGDQQ SWRPQRGLPE 420 KSVAVLKAWM FENFLRPYPR DKEKEMLAAR SGLSRSQVSN WFINARVRLW KPMIEEMYED 480 LKKASAGIME A |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.76031 | 0.0 | ear| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G076272 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G076272_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083755 | 0.0 | BT083755.1 Zea mays full-length cDNA clone ZM_BFb0035M24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001334628.1 | 0.0 | uncharacterized protein LOC100274028 isoform 1 | ||||
Refseq | XP_008658300.1 | 0.0 | putative POX domain/homeobox DNA-binding domain family protein isoform X1 | ||||
Refseq | XP_008658301.1 | 0.0 | putative POX domain/homeobox DNA-binding domain family protein isoform X1 | ||||
Refseq | XP_008658302.1 | 0.0 | putative POX domain/homeobox DNA-binding domain family protein isoform X1 | ||||
Refseq | XP_020399149.1 | 0.0 | putative POX domain/homeobox DNA-binding domain family protein isoform X1 | ||||
TrEMBL | C4IYV8 | 0.0 | C4IYV8_MAIZE; Homeobox protein ATH1 | ||||
STRING | GRMZM2G076272_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3143 | 33 | 65 |
Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-50 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G076272_P01 |
Entrez Gene | 100274028 |