PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G075956_P01 | ||||||||
Common Name | ZEAMMB73_051111, Zm.2957 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 519aa MW: 57097 Da PI: 5.8957 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.8 | 2.2e-06 | 279 | 300 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H GRMZM2G075956_P01 279 FCLICGKGFKRDANLRMHMRGH 300 5*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.21E-5 | 276 | 303 | No hit | No description |
PROSITE profile | PS50157 | 11.552 | 278 | 305 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 278 | 300 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.3E-5 | 280 | 304 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 280 | 300 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 71 | 327 | 360 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 365 | 387 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MEGRMTSLEA TMKVSSSMAS SISRNADPDQ QTLRPNSVEQ FYFPRPGQSL PGIPPFFGPP 60 SSSLYLPNDN EAKFGNQFES NPSQNTDWDP QAIVSNLTFL EQKIKQVKDI VQSMSNRENQ 120 LAGGSSELAA KQHLVTADLT SIIIQLISTA GSLLPSMKNP LLSSNPAVRQ LGNTLGSPMG 180 LGMNANQRPS VDSKTDIPDT GKTSDYDELM NSLNPAQDER DEMIKCPNPC GGEGSEPTPM 240 EDHDVKESDD GGEGENLPPG SYVVLQLEKE EILAPHTHFC LICGKGFKRD ANLRMHMRGH 300 GDEYKTPAAL AKPTKDSGAD HAPVTRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRSH 360 CDKSYTCSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH VALFQGHTPA 420 LPMEDVKVSE ASEQPQDSEP MNEMARSNMY SFPCSSSDGI SNLDMKMADD VRGYFSPLNF 480 DPCFGALDDF TRPGFDISEN PFSFLPSGSC SYGQQNGDS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.2957 | 0.0 | ear| embryo| endosperm| meristem| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G075956 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G075956_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060728 | 0.0 | BT060728.1 Zea mays full-length cDNA clone ZM_BFb0039M21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149728.2 | 0.0 | uncharacterized protein LOC100283355 | ||||
Refseq | XP_020397739.1 | 0.0 | uncharacterized LOC100283355 isoform X1 | ||||
Refseq | XP_020397740.1 | 0.0 | uncharacterized LOC100283355 isoform X1 | ||||
Swissprot | Q943I6 | 0.0 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | C0HEH2 | 0.0 | C0HEH2_MAIZE; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
STRING | GRMZM2G075956_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 | Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-155 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G075956_P01 |
Publications ? help Back to Top | |||
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