PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G075562_P02 | ||||||||
Common Name | LOC100304421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | DBB | ||||||||
Protein Properties | Length: 232aa MW: 25112.2 Da PI: 5.2386 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.6 | 2.3e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++++ ++C+++ lC +C + H+ Ht++ GRMZM2G075562_P02 4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP | |||||||
2 | zf-B_box | 29 | 2.2e-09 | 47 | 88 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+++++++++ C +++ lC++C ++H H+++ GRMZM2G075562_P02 47 LCDRCGSQPASVRCLEDNASLCQNCDWNGHDAesgasgHKRQ 88 7*****************************446778888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.153 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.34E-5 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.613 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-6 | 47 | 88 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.75E-7 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.0051 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MASLCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPASVRC 60 LEDNASLCQN CDWNGHDAES GASGHKRQAI NCYSGCPSSA ELSRIWSFIT DIPTVAAEPD 120 YEDGLSMMTI DGSDVTNRHD TSDDKRLLEI ANTTLMSDPP SADKLKSPTG SSSGDGFDVM 180 TLATDQPAGP VSATPKVLLG FHIFLQECFS TLCSVFACQK TCCLWHASYL NI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.79956 | 0.0 | ear| leaf| meristem| ovary| pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G075562 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G075562_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957239 | 0.0 | EU957239.1 Zea mays clone 1586620 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001159328.1 | 1e-141 | uncharacterized protein LOC100304421 | ||||
Refseq | XP_008643907.1 | 1e-141 | uncharacterized protein LOC100304421 isoform X1 | ||||
Swissprot | Q9LUA9 | 6e-59 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A1D6HIX4 | 1e-171 | A0A1D6HIX4_MAIZE; Zinc finger protein CONSTANS-LIKE 9 | ||||
STRING | GRMZM2G075562_P01 | 1e-140 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 3e-61 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G075562_P02 |
Publications ? help Back to Top | |||
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