PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G074908_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 304aa    MW: 32180.4 Da    PI: 5.8881
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G074908_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.8e-28197250155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+ WtpeLH+rFv ave+L G + A+Pk+i++lm+v+gLt+e+v+SHLQkYR+
  GRMZM2G074908_P01 197 KARIAWTPELHNRFVAAVEHL-GDKGAVPKAIVRLMNVEGLTRENVASHLQKYRI 250
                        68*******************.999*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-28194254IPR009057Homeodomain-like
PROSITE profilePS5129413.508194253IPR017930Myb domain
SuperFamilySSF466892.15E-18196254IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-23197250IPR006447Myb domain, plants
PfamPF002491.5E-8201249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKDDDDDGGA GSGARGRVLE SEHGLPTRGP AHDPTAPVPL SSSSSTQRRD RPAHDPTAPA  60
PSSSSSSIRR RDMKDDDDGG AGSGACGRVL EWEHGLPTAE ELTPVSHPLI PPALAAAFGI  120
DVPRTAFPSS AFDSPALARK PPNTRLSLGC YGEDDDEKEE EGKSEVAAYT TGACGGGKSE  180
DAASASGACR GGRAEKKARI AWTPELHNRF VAAVEHLGDK GAVPKAIVRL MNVEGLTREN  240
VASHLQKYRI YLKQQARSPA GPQPPPAYSP SDSRPQQPSD TSTRSTCDIE KLERDKEFWA  300
LVAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-24197253157Transcription factor LUX
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G074908
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G074908_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666599e-68AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence.
GenBankAP0032519e-68AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05.
GenBankAP0149579e-68AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126099e-68CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674835.10.0transcription factor PCL1
TrEMBLA0A1D6N7C90.0A0A1D6N7C9_MAIZE; Response regulator 20
STRINGGRMZM2G074908_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.39e-30G2-like family protein