 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GRMZM2G074032_P01 |
| Common Name | LOC103639380, ZEAMMB73_608286, Zm.130314 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
C2H2 |
| Protein Properties |
Length: 448aa MW: 46826.8 Da PI: 9.9629 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G074032_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 21.2 | 7.6e-07 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++Cg+ F r nL+ H r+H
GRMZM2G074032_P01 82 YVCEICGQGFQREQNLQMHRRRH 104
9*********************9 PP
|
| 2 | zf-C2H2 | 10.7 | 0.0017 | 185 | 207 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C C k + +s++k H++t+
GRMZM2G074032_P01 185 WVCARCAKGYAVQSDYKAHLKTC 207
58*******************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 448 aa
Download sequence Send
to blast |
MALLVKSHQQ MLVSSSTTSS SSPSSASQQR HPPPPPPPSS SCLTDQQQPS PAKRKRRPPG 60
TPDPDAEVVA LSPRTLLESD RYVCEICGQG FQREQNLQMH RRRHKVPWRL VKRAPPPAGG 120
GEDSAGANNS STAGTGVGGG GGGPRKRVFV CPEPSCLHHD PAHALGDLVG IKKHFRRKHG 180
GRRQWVCARC AKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSSRIRG 240
EAVAVAVPAP PSALPVIRPA VPRHQPTVAP APPPPELQLL PASAAASAPL ASTPTASLST 300
TTNASQEQEP HAAAAATTTT KLQLSIGPTV IAPGADAAAA TASAVGEEDD SEAKELRRAM 360
KEKAAADAAR ARARGEAAAA ERALDEARRA RQRARADLEK ACALRDHAAR LLAQVTCHAC 420
RQRSLAVAGG PAVACDSIIR GGGGEAGI
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}. |
| Uniprot | TISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT087165 | 0.0 | BT087165.2 Zea mays full-length cDNA clone ZM_BFb0183A11 mRNA, complete cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kim JY,Ryu JY,Baek K,Park CM
High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
New Phytol., 2016. 209(1): p. 265-79
[PMID:26256266] - Ryu JY,Kim JY,Park CM
Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1093715
[PMID:26452406] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
J. Exp. Bot., 2017. 68(17): p. 4851-4867
[PMID:28992128] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
J. Pineal Res., 2018. 65(2): p. e12494
[PMID:29607541]
|
