![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G073044_P01 | ||||||||
Common Name | LOB16, LOC100282086, ZEAMMB73_237755, Zm.93895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 313aa MW: 33373.5 Da PI: 5.2468 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 87.8 | 1.5e-27 | 4 | 107 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C + C+++p++ p++q++++ +++k++G++ +l+ll+a+p++ r+++++sl+yeA+ r+ +PvyG+vg++++ q++ GRMZM2G073044_P01 4 SCNGCRVLRKGCGDACTIRPCLqwieaPEAQANATVFLAKFYGRAGLLNLLAAAPDDGvRPAVFRSLLYEACGRIVNPVYGSVGLLWSRQWH 95 6*****************************************************99998********************************* PP DUF260 87 leqlkaelallk 98 + ++e++l++ GRMZM2G073044_P01 96 RCADAVEAVLRG 107 **9999988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.425 | 3 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.5E-22 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCGDACT IRPCLQWIEA PEAQANATVF LAKFYGRAGL LNLLAAAPDD 60 GVRPAVFRSL LYEACGRIVN PVYGSVGLLW SRQWHRCADA VEAVLRGDPV VQVDAGSDAA 120 AAPPLLAGAR PPPPAAFDIR HVPRDPDATA ADLLRAGRKR FKRAGSSSNA SKAKPLPLEL 180 EGKAGNNERA SPSPPPTQQR EAEELQPVPM VVEPEHGEES AGSHDHHLQL QGWSEEDTDV 240 EAASHVSQAE AEPPASSQSQ VLVADQEEEE VGLELTLGFE PVVRQQPRSS RCDKSGLSAA 300 SSLIGLRLQL PAA |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.93895 | 0.0 | silk |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G073044 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G073044_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU963144 | 0.0 | EU963144.1 Zea mays clone 258271 seed specific protein Bn15D17A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148471.2 | 0.0 | seed specific protein Bn15D17A | ||||
TrEMBL | A0A3L6DNG8 | 0.0 | A0A3L6DNG8_MAIZE; LOB domain-containing protein 41 | ||||
TrEMBL | B6TDS9 | 0.0 | B6TDS9_MAIZE; LOB transcription factor | ||||
STRING | GRMZM2G073044_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 7e-58 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G073044_P01 |
Entrez Gene | 100282086 |
Publications ? help Back to Top | |||
---|---|---|---|
|