PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G072376_P01 | ||||||||
Common Name | bHLH56 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 24492.5 Da PI: 6.7541 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.3e-10 | 184 | 211 | 3 | 30 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 r+h+e+ErrRR+riN +++Lr+llP+ GRMZM2G072376_P01 184 RSHSEAERRRRERINAHLARLRSLLPNT 211 78************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.242 | 181 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.29E-8 | 184 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-7 | 184 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-7 | 184 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGGHGDHHRR RRQEVEVLVH DDDEDLEHQS RACGGGATSG VVVEQGAGDG GGQAASSSLG 60 SVSAATMAPP QIFCWPPQHH HNSSNDVGGG QQPPFFPPLP PLPPTPPPFF ADLYARRALQ 120 LAYDHHHPGG GPSTSSDPLG LYMAGGGSGM MMMPPPFASS LPFGDFGRMT AQEIMDAKAL 180 AASRSHSEAE RRRRERINAH LARLRSLLPN TTKVLILIII DDITHARIE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 194 | ERRRRE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G072376 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G072376_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726886 | 0.0 | KJ726886.1 Zea mays clone pUT3427 bHLH transcription factor (bHLH56) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008653882.1 | 1e-156 | transcription factor bHLH30 | ||||
TrEMBL | A0A060CYS4 | 1e-165 | A0A060CYS4_MAIZE; BHLH transcription factor (Fragment) | ||||
STRING | GRMZM2G072376_P01 | 1e-166 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Representative plant | OGRP377 | 15 | 106 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G072376_P01 |