PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G071907_P01 | ||||||||
Common Name | LOC100273049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 298aa MW: 31360.8 Da PI: 10.7007 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.6 | 1.9e-31 | 212 | 270 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp ++++tYegeH+h+ GRMZM2G071907_P01 212 SDEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPAMLVVTYEGEHRHT 270 69************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.4E-18 | 167 | 209 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-32 | 199 | 270 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.825 | 206 | 272 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-26 | 209 | 270 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-37 | 211 | 271 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 213 | 269 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MAVDLMGCYA PRRANDQLAI QEAAAAGLRN LELLVTSLST QAAAPHRAAD QPFGEIAGQA 60 VSKFRKVISI LDRTGHARFR RGPVEPPPPT PPPPPVVPGP APLAAVSVAQ PPQSLTLDFT 120 KPNLAVSAAT SVTSTSFFSS VTAGEGSVSK GRSLMSSGKP PLSGHKRKPC AGAHSEATTN 180 GSRCHCSKRR KNRVKRTIRV PAISSKVADI PSDEYSWRKY GQKPIKGSPY PRGYYKCSTV 240 RGCPARKHVE RATDDPAMLV VTYEGEHRHT PGAVQGPSPL ATASPVPVAV SAGNGLVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 199 | 269 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.88683 | 0.0 | cell culture| ear| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G071907 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G071907_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087411 | 0.0 | BT087411.1 Zea mays full-length cDNA clone ZM_BFb0064I18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001339110.1 | 0.0 | uncharacterized protein LOC100273049 | ||||
Swissprot | Q9SV15 | 6e-93 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | C4J9B4 | 0.0 | C4J9B4_MAIZE; Putative WRKY transcription factor 11 | ||||
STRING | GRMZM2G071907_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 | Representative plant | OGRP3557 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 2e-85 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G071907_P01 |