PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G071101_P01
Common NameLOC103654491, ZEAMMB73_775982
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 415aa    MW: 44987.3 Da    PI: 6.5415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G071101_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05248267120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C k+F+r  n++ H+
  GRMZM2G071101_P01 248 FSCPVCYKTFNRYNNMQMHM 267
                        89*****************9 PP
2zf-C2H212.50.00043334354323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C +Cgk F  k + ++H +++
  GRMZM2G071101_P01 334 CRKCGKAFAVKGDWRTHEKNC 354
                        *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.67E-5244270No hitNo description
PROSITE profilePS501579.743248275IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-6248267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45248270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-6316352No hitNo description
Gene3DG3DSA:3.30.160.602.3E-5319352IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621332352IPR007087Zinc finger, C2H2
SMARTSM0035582332352IPR015880Zinc finger, C2H2-like
SMARTSM00355220358381IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEDPYTSFFK SSYYYYGSSY PAAPAPHHLP PYTTLYPAAA SHQYPACFFQ PPPLPLHEHD  60
SPPSPPLREA LPLLSQSPTR AASRARRPRP HVAVDSDSED GADDFLREGA VGSSVAPSTT  120
TTRAPLFADL NCMPSCCDDD PMDLEAAAAA PTDDDADDAA VALRIGLPPA PVNGCGGAGS  180
DLRSGLSGRG ACGGMEAEED EDECNKVGDG DGDEVVPLGF ASTPIGRLNK GQYWIPTPAQ  240
ILIGPTQFSC PVCYKTFNRY NNMQMHMWGH GSQYRKGPES LRGVQPTAML RLPCYCCAPG  300
CRNNIDHPRA RPLKDFRTLQ THYKRKHGLK PFLCRKCGKA FAVKGDWRTH EKNCGRLWYC  360
LCGSEFKHKR SLKDHARAFG HGHGGAFGCN LAGADGLDDD DDGAVSDIEH DCAAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.396250.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G071101
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G071101_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969070.0FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679544.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-114ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3L6EYX90.0A0A3L6EYX9_MAIZE; Zinc finger protein WIP2
TrEMBLK7U4J60.0K7U4J6_MAIZE; Zinc finger protein WIP2
STRINGGRMZM2G071101_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]