PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G070523_P01
Common NameLOC100274206
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 459aa    MW: 48976.7 Da    PI: 6.8324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G070523_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.8e-154289148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+ Ed  l d v+ +G g+W+++ r  g+ R++k+c++rw ++l
  GRMZM2G070523_P01 42 KGPWTAAEDAMLMDHVRHHGEGNWNAVQRVTGLLRCGKSCRLRWTNHL 89
                       79******************************99***********996 PP
2Myb_DNA-binding51.13.1e-1695138146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
  GRMZM2G070523_P01  95 KGSFSPDEELLIAQLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 138
                        799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5783789IPR017930Myb domain
SMARTSM007171.1E-124191IPR001005SANT/Myb domain
SuperFamilySSF466892.06E-2841136IPR009057Homeodomain-like
PfamPF002495.9E-134289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-214396IPR009057Homeodomain-like
CDDcd001674.01E-104489No hitNo description
PROSITE profilePS5129422.71790144IPR017930Myb domain
SMARTSM007171.3E-1494142IPR001005SANT/Myb domain
PfamPF002493.2E-1595138IPR001005SANT/Myb domain
CDDcd001677.44E-1197138No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2497143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEKSPGAAPT SSPEEEVAAD GRGHVEDATG QKEQATPVVL KKGPWTAAED AMLMDHVRHH  60
GEGNWNAVQR VTGLLRCGKS CRLRWTNHLR PNLKKGSFSP DEELLIAQLH AQLGNKWARM  120
AAHLPGRTDN EIKNYWNTRT KRRQRAGLPV HPPPEVQLQL ALARRCRYDD FSPLPSPQEL  180
SGVQALVGAA ASAGYASSRP APLDLARQLT QTTNQQTETV QFLSPPPFSA PSSPWARPFA  240
RNAQYFQLAH SSSPVSPTTP DLSLGYGARS AGADQSRLPP LSPSPCPRVV ELPSNQYAQP  300
TPPASAAATA LGGGGAALPD HQNAASLEKM LRELHDVIKV DPPALVPASG GAALEWHGGG  360
EFVSGLQALQ QHRVDDMDTL FGLLHPPLRR APETVAAAAA GSTHSGSTSQ HSSDDQKPTD  420
VVGLGLDLDL QVAGSTVSSD QEDWGLDAVC QWSSVSRIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-274014325127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G070523
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G070523_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425370.0BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds.
GenBankKJ7275320.0KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681539.10.0putative MYB DNA-binding domain superfamily protein isoform X1
TrEMBLA0A1D6GMC00.0A0A1D6GMC0_MAIZE; Myb domain protein 101
STRINGGRMZM2G070523_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-63myb domain protein 101