PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G070446_P01 | ||||||||
Common Name | LOC103629496, Zm.144168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | DBB | ||||||||
Protein Properties | Length: 375aa MW: 40436.9 Da PI: 4.8717 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.9 | 1.6e-06 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ ++ e++ C ++ lC C +e H H++v+ GRMZM2G070446_P01 4 QCNACGAAEARVLCCADEAALCVACDEEVHAAnklagkHQRVQ 46 6******99*********************6678899998876 PP | |||||||
2 | zf-B_box | 29.3 | 1.8e-09 | 62 | 94 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 +kC+ ++e +fC +++ llC+dC +++H GRMZM2G070446_P01 62 VPKCDICQEASGYFFCLEDRALLCRDCDVAIHT 94 589****************************93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.054 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.96E-8 | 3 | 47 | No hit | No description |
SMART | SM00336 | 6.9E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.2E-16 | 60 | 107 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.77E-9 | 63 | 107 | No hit | No description |
Pfam | PF00643 | 3.7E-7 | 63 | 94 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.745 | 65 | 107 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MRIQCNACGA AEARVLCCAD EAALCVACDE EVHAANKLAG KHQRVQLLTD SATAAASPAP 60 AVPKCDICQE ASGYFFCLED RALLCRDCDV AIHTVNSFVS VHQRFLLTGV QVGLDPADPV 120 PPIAEKHVNA SGGSVKQSVR HLPRRSPGVQ FSVEGSASVP SKNVSNGDYS RQNSVPTARA 180 EVVDWTKNNT TIQSVESPPK YMSEESPTLL QSSQTTTVFS NQINGNSDGT YHLSFSSGNV 240 TDSLPDWPVD EFFSNSEYVP NLGFSEHGSS KGDNAKLESA GGSLQCRLAE GSIAEELLGQ 300 VPGLITDDYM SRVPENSWTV PEVPSPPTAS GLNWHGNLCF PAYDSTMFVP EITSLQNSQN 360 QFTVPSSFKR RRREY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.81436 | 0.0 | aerial organ| endosperm| glume| meristem| ovary| pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G070446 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G070446_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035233 | 0.0 | BT035233.1 Zea mays full-length cDNA clone ZM_BFb0047A02 mRNA, complete cds. | |||
GenBank | KJ728531 | 0.0 | KJ728531.1 Zea mays clone pUT6836 orphans transcription factor (Orphan243) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001333763.1 | 0.0 | probable salt tolerance protein | ||||
TrEMBL | A0A1D6LL88 | 0.0 | A0A1D6LL88_MAIZE; B-box zinc finger protein 22 | ||||
STRING | GRMZM2G070446_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 |
Representative plant | OGRP1804 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 4e-63 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G070446_P01 |
Entrez Gene | 103629496 |