PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

WRKY

Protein Properties

Length: 354aa MW: 38044.1 Da PI: 10.3114

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G070211_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.4e-31	287	344	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d ++++tYegeHnh+ GRMZM2G070211_P01 287 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSAMLIVTYEGEHNHT 344 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.8E-17	237	283	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.9E-33	273	344	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	280	346	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-26	283	344	IPR003657	WRKY domain
SMART	SM00774	2.8E-37	285	345	IPR003657	WRKY domain
Pfam	PF03106	1.5E-26	287	343	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEEVEEANRE AVESCHRVLA LLSQPHDPAQ ARSIALGTDE ACARFRKVVS LLSNGGAGLG 60 EAGPSCGSAS ASRPRAKLVS RRQNPGFLTQ KGFLDSNTPV VVLNSAHPST TSAQVYPRTG 120 ALVDAQSVHP LGVGGPPKLV QPLSAHFQFG SVPARYQFPN QQQQKLHAEM FKRSNSGVNL 180 KFESASGTAG TMSSARSFLS SLSMDGSVAS LDAKSSSFHL IGGPAMSDPL NAQQPPRRRC 240 TGRGEDGTGK CAVTGRCHCS KRSRKLRVKR SIKVPAISNK IADIPPDEYS WRKYGQKPIK 300 GSPHPRGYYK CSSVRGCPAR KHVERCVDDS AMLIVTYEGE HNHTRMPTTQ SAQV

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEEVEEANRE AVESCHRVLA LLSQPHDPAQ ARSIALGTDE ACARFRKVVS LLSNGGAGLG  60
EAGPSCGSAS ASRPRAKLVS RRQNPGFLTQ KGFLDSNTPV VVLNSAHPST TSAQVYPRTG  120
ALVDAQSVHP LGVGGPPKLV QPLSAHFQFG SVPARYQFPN QQQQKLHAEM FKRSNSGVNL  180
KFESASGTAG TMSSARSFLS SLSMDGSVAS LDAKSSSFHL IGGPAMSDPL NAQQPPRRRC  240
TGRGEDGTGK CAVTGRCHCS KRSRKLRVKR SIKVPAISNK IADIPPDEYS WRKYGQKPIK  300
GSPHPRGYYK CSSVRGCPAR KHVERCVDDS AMLIVTYEGE HNHTRMPTTQ SAQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-21	278	347	7	75	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.29590	0.0	meristem\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G070211

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G070211_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069872	0.0	BT069872.1 Zea mays full-length cDNA clone ZM_BFb0311A08 mRNA, complete cds.
GenBank	BT087336	0.0	BT087336.1 Zea mays full-length cDNA clone ZM_BFb0044E21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001147091.2	0.0	uncharacterized protein LOC100280700
Refseq	XP_008673607.1	0.0	WRKY transcription factor 21 isoform X1
Swissprot	Q93WU6	2e-91	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	C0PNK3	0.0	C0PNK3_MAIZE; Putative WRKY transcription factor 74
STRING	GRMZM2G070211_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87
Representative plant	OGRP1817	15	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	1e-67	WRKY DNA-binding protein 74

Link Out ? help Back to Top
Phytozome	GRMZM2G070211_P01
Entrez Gene	100280700

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034]