PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G068476_P01
Common Namecl14722_1(98)
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 741aa    MW: 83440.3 Da    PI: 5.0135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G068476_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.4e-10289311527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +Crf++ tG C+yG++C+F+H++
  GRMZM2G068476_P01 289 NCRFYMSTGRCSYGSSCHFNHPR 311
                        7********************96 PP
2zf-CCCH31.23.7e-10347370427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        + C +++r+GtC+yG +C+F+H++
  GRMZM2G068476_P01 347 RKCIYYMRNGTCRYGKKCCFNHPE 370
                        67********************96 PP
3zf-CCCH23.11.3e-07474499227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++C+f +r+G Ck+ ++C++ H++
  GRMZM2G068476_P01 474 ERPECPFLLRFGNCKFASSCQYYHPK 499
                        689*********************96 PP
4zf-CCCH36.39.4e-12546570327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C+f+ +tG Ck+G++CkF+H++
  GRMZM2G068476_P01 546 EPDCPFYVKTGSCKFGANCKFHHPK 570
                        789********************96 PP
5zf-CCCH21.83.3e-07613639127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ Cr+++++G Ck+ + C F+H++
  GRMZM2G068476_P01 613 PGQPDCRYYMQFGKCKFQSACIFNHSK 639
                        5789*********************95 PP
6zf-CCCH31.82.5e-10649672427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C+f+++t tC++G+ C F H++
  GRMZM2G068476_P01 649 AECPFYMKTRTCQFGSACEFYHPK 672
                        68********************96 PP
7zf-CCCH21.44.3e-07713735527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C+++++ G+Cky  +CkF+H++
  GRMZM2G068476_P01 713 ECSHYMKHGYCKYKMNCKFHHPR 735
                        7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.286284312IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4284311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6288311IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8289311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6290310IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-5343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.366343371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6346371IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8347370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5349370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582472500IPR000571Zinc finger, CCCH-type
SMARTSM003560.081473499IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.136543571IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-7543570IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9546570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5547571IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4549569IPR000571Zinc finger, CCCH-type
SMARTSM003560.0069612639IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864612640IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4614639IPR000571Zinc finger, CCCH-type
SMARTSM003560.022645672IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577645673IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-8649672IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.418708736IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5710738IPR000571Zinc finger, CCCH-type
SMARTSM003560.38710735IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4713735IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MEQSAGDESR ETEAENAVEY NKKVDQEDTI NRQGTAKEDS GVEPQEENVV DPDQGVDDFS  60
VLDEGNVVAQ CTSDQLRTTM EDNAAEMQEV VEQEGAIFEK GVTSDGITVE DQDKEMEQSA  120
GDESRVTKGE NAVKDKKVYQ EDAIDKQGAA EDGSGVKSQE DNMVVPGQCT DGLPVLDEGN  180
VVPQYTSDQL RTTTDNNAAV DPELVEQEGV DSIVGAAKVG IAVEESREDI MVEKQVEGVL  240
LQDQDEAVEQ CTSDQLRTIT DGNDVEDQEV HREKVGLSEG YPQKPGKLNC RFYMSTGRCS  300
YGSSCHFNHP RLKAKLEVSS FPSEQRNHEA EFLELNRVGL PIREGARKCI YYMRNGTCRY  360
GKKCCFNHPE QVLDVQRHTA TGWDDTNLQS SPHSKKSPEH KTMDDISSGS EVLPPNILRM  420
LLPPQNVPPS TKEKEIRIKK DPDWASASDD SDGCCSADSS DGPLCKQEHE DYPERPECPF  480
LLRFGNCKFA SSCQYYHPKD KFPSTYHPED KFQSRYHQKE KSSRHHPKKE PALSGELMVY  540
PDRPSEPDCP FYVKTGSCKF GANCKFHHPK DITPNMQGPA SPKRSVAAKE HHAAARATLQ  600
DQMYQQQKFP ERPGQPDCRY YMQFGKCKFQ SACIFNHSKD ILSSGWHPAE CPFYMKTRTC  660
QFGSACEFYH PKDRCSGRGG VIDGTDYGHD FATKSRNVLQ ELAIYPERPD ELECSHYMKH  720
GYCKYKMNCK FHHPRDRLPK K
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.25900.0cell culture| ear| embryo| endosperm| meristem| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G068476
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G068476_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0372680.0BT037268.1 Zea mays full-length cDNA clone ZM_BFb0160O02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402464.10.0uncharacterized protein LOC100216738 isoform X1
TrEMBLA0A1D6L0050.0A0A1D6L005_MAIZE; Zinc finger CCCH domain-containing protein 33
STRINGGRMZM2G068476_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Representative plantOGRP1597633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-37floral homeotic protein (HUA1)