PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G067171_P01
Common NameGATA31, LOC100304247
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 461aa    MW: 49377.3 Da    PI: 10.6303
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G067171_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.11.4e-14153184132
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                        C +Cg+  Tp+WR+gp g+ tLCnaCG++ + 
  GRMZM2G067171_P01 153 CLQCGAAVTPQWRSGPMGQGTLCNACGVRLKA 184
                        89**************************9986 PP
2GATA52.47.4e-17287321135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  GRMZM2G067171_P01 287 CLHCGSSSTPQWREGPLGRSTLCNACGVRYRQGRL 321
                        99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.545147202IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-12147204IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-12148198No hitNo description
Gene3DG3DSA:3.30.50.109.2E-13151189IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.75E-10153197No hitNo description
PfamPF003205.4E-12153184IPR000679Zinc finger, GATA-type
PROSITE patternPS003440153178IPR000679Zinc finger, GATA-type
SMARTSM004015.3E-14281335IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.44281317IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-13282341No hitNo description
Gene3DG3DSA:3.30.50.109.6E-14285319IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.28E-13286335No hitNo description
PfamPF003201.3E-14287321IPR000679Zinc finger, GATA-type
PROSITE patternPS003440287312IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAMVDEGGKG EAQPPGLDPR NRRSAATRAT GDMDGGGRGE EWEGPPGYVL SLPAAALPLP  60
VAVSCLDATV RRKGRSHIRH RGHPSGWWAF RLPVPAPEEA KRPVPPASAA NNPSEEDRSC  120
PRHQRLPVRQ APAPGPHTPA PAEERPAKRV RMCLQCGAAV TPQWRSGPMG QGTLCNACGV  180
RLKAAGALRG QVKHRPTPAT ARTPARPPLD SPASESSPDS PILEPGSVPD VYLVRKKPLK  240
RGRPPPPPRT VPAAAPPLAP AVYLVKKKKK SASARKPWRP PKSAKQCLHC GSSSTPQWRE  300
GPLGRSTLCN ACGVRYRQGR LLPEYRPLAS PTFEPSEHAN KHSQVMQLHR QRKSQGQHHP  360
LPAEHPRAMD VLQFPQRWQV KEEYPPTPLH QPLPHPVVDG SLASGELRVG DMVDAAADAG  420
HGGGGGKGSD LNNNAPSSLD SRLLEGPSAP LLVDGDKPLV H
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G067171
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G067171_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605890.0BT060589.1 Zea mays full-length cDNA clone ZM_BFb0019J04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159164.10.0uncharacterized protein LOC100304247
TrEMBLC0HE330.0C0HE33_MAIZE; C2C2-GATA transcription factor
STRINGGRMZM2G067171_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.12e-27GATA transcription factor 14