 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GRMZM2G067171_P01 |
| Common Name | GATA31, LOC100304247 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
GATA |
| Protein Properties |
Length: 461aa MW: 49377.3 Da PI: 10.6303 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G067171_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 45.1 | 1.4e-14 | 153 | 184 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32
C +Cg+ Tp+WR+gp g+ tLCnaCG++ +
GRMZM2G067171_P01 153 CLQCGAAVTPQWRSGPMGQGTLCNACGVRLKA 184
89**************************9986 PP
|
| 2 | GATA | 52.4 | 7.4e-17 | 287 | 321 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +Cg+++Tp+WR+gp g +tLCnaCG++yr +l
GRMZM2G067171_P01 287 CLHCGSSSTPQWREGPLGRSTLCNACGVRYRQGRL 321
99*****************************9886 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50114 | 12.545 | 147 | 202 | IPR000679 | Zinc finger, GATA-type |
| SMART | SM00401 | 2.9E-12 | 147 | 204 | IPR000679 | Zinc finger, GATA-type |
| SuperFamily | SSF57716 | 5.7E-12 | 148 | 198 | No hit | No description |
| Gene3D | G3DSA:3.30.50.10 | 9.2E-13 | 151 | 189 | IPR013088 | Zinc finger, NHR/GATA-type |
| CDD | cd00202 | 8.75E-10 | 153 | 197 | No hit | No description |
| Pfam | PF00320 | 5.4E-12 | 153 | 184 | IPR000679 | Zinc finger, GATA-type |
| PROSITE pattern | PS00344 | 0 | 153 | 178 | IPR000679 | Zinc finger, GATA-type |
| SMART | SM00401 | 5.3E-14 | 281 | 335 | IPR000679 | Zinc finger, GATA-type |
| PROSITE profile | PS50114 | 12.44 | 281 | 317 | IPR000679 | Zinc finger, GATA-type |
| SuperFamily | SSF57716 | 2.57E-13 | 282 | 341 | No hit | No description |
| Gene3D | G3DSA:3.30.50.10 | 9.6E-14 | 285 | 319 | IPR013088 | Zinc finger, NHR/GATA-type |
| CDD | cd00202 | 2.28E-13 | 286 | 335 | No hit | No description |
| Pfam | PF00320 | 1.3E-14 | 287 | 321 | IPR000679 | Zinc finger, GATA-type |
| PROSITE pattern | PS00344 | 0 | 287 | 312 | IPR000679 | Zinc finger, GATA-type |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MAMVDEGGKG EAQPPGLDPR NRRSAATRAT GDMDGGGRGE EWEGPPGYVL SLPAAALPLP 60
VAVSCLDATV RRKGRSHIRH RGHPSGWWAF RLPVPAPEEA KRPVPPASAA NNPSEEDRSC 120
PRHQRLPVRQ APAPGPHTPA PAEERPAKRV RMCLQCGAAV TPQWRSGPMG QGTLCNACGV 180
RLKAAGALRG QVKHRPTPAT ARTPARPPLD SPASESSPDS PILEPGSVPD VYLVRKKPLK 240
RGRPPPPPRT VPAAAPPLAP AVYLVKKKKK SASARKPWRP PKSAKQCLHC GSSSTPQWRE 300
GPLGRSTLCN ACGVRYRQGR LLPEYRPLAS PTFEPSEHAN KHSQVMQLHR QRKSQGQHHP 360
LPAEHPRAMD VLQFPQRWQV KEEYPPTPLH QPLPHPVVDG SLASGELRVG DMVDAAADAG 420
HGGGGGKGSD LNNNAPSSLD SRLLEGPSAP LLVDGDKPLV H
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT060589 | 0.0 | BT060589.1 Zea mays full-length cDNA clone ZM_BFb0019J04 mRNA, complete cds. |
