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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G065538_P01 |
Common Name | ABI33, ZEAMMB73_082033, Zm.144802 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
B3 |
Protein Properties |
Length: 242aa MW: 25699.1 Da PI: 10.1641 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G065538_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 100.1 | 1.3e-31 | 53 | 148 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f+k+ tpsdv+k++rlv+pk++ae+h gg + +++ l led g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+
GRMZM2G065538_P01 53 FDKAVTPSDVGKLNRLVIPKQHAERHfplhlaaaaGGGESTGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFY 144
89*********************************7777899************************************************** PP
E-SS CS
B3 84 ldgr 87
++
GRMZM2G065538_P01 145 RSAA 148
7644 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MLRKHTYFDE LAQNKRAFAA AAAAASSAAA TTSTSLGNDN RSSSPACARE HLFDKAVTPS 60 DVGKLNRLVI PKQHAERHFP LHLAAAAGGG ESTGVLLNLE DAAGKVWRFR YSYWNSSQSY 120 VLTKGWSRFV KEKGLQAGDV VGFYRSAAGA DSKLFIDCKL RPNSVDTAST TSPVGSSPPP 180 APVAKAVRLF GVDLLTAPAD AMARCKRARD LASPPQAAIK KQLVELALAS VDQCYGAGRS 240 FS
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 3e-51 | 49 | 162 | 4 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-51 | 49 | 162 | 4 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Zm.84705 | 1e-161 | cell culture| ear| endosperm| meristem| ovary| shoot |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KJ727884 | 0.0 | KJ727884.1 Zea mays clone pUT5977 ABI3VP1 transcription factor (ABI33) gene, partial cds. |