PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G065478_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 193aa MW: 20628 Da PI: 7.4143 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.4 | 4.1e-16 | 8 | 79 | 14 | 87 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ++p kf+++ +g+ + tl+l+++sg +W v + + ++ +l++GW +F++a++L+e D vvF++ g GRMZM2G065478_P01 8 MNKSIPEKFVSDPNGQ--LTETLSLKSPSGATWLVDVARNADADELLLGSGWGDFARAHELQEDDLVVFTRGGG 79 4579******888888..6669***************87888888*************************6543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.52 | 1 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-13 | 7 | 79 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.12E-15 | 10 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-15 | 11 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.60E-15 | 11 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MQEHWSRMNK SIPEKFVSDP NGQLTETLSL KSPSGATWLV DVARNADADE LLLGSGWGDF 60 ARAHELQEDD LVVFTRGGGG GSGSGCSFDV LVLDSSGCEK APCFFAANKV HGRFSGGGRR 120 QAARRRVFRG PEPEGLGAQL RLAAAAASTH GASTSKQKCG ETDKPSRAER FDIMKRDGCG 180 FNEIEAQARV SPL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G065478 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G065478_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU944836 | 0.0 | EU944836.1 Zea mays clone 233444 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020402098.1 | 1e-140 | B3 domain-containing protein LOC_Os12g40090 | ||||
TrEMBL | A0A317Y1A1 | 1e-91 | A0A317Y1A1_MAIZE; B3 domain-containing protein | ||||
STRING | GRMZM2G065478_P01 | 1e-139 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Representative plant | OGRP6299 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G065478_P01 |