PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G062650_P01
Common NameNAC128, Zm.81135
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 391aa    MW: 42132.2 Da    PI: 6.0572
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G062650_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-52241551129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhP+d e++++yL+kkv++++ ++  +i+++d++k+ePwdLpk +k +ekewyfF ++d+ky+tg r+nrat++gyWkatgkdkev
  GRMZM2G062650_P01  24 LPPGFRFHPSDFEIINDYLTKKVHDRDYSC-IAIADADLNKTEPWDLPKVAKMGEKEWYFFYQKDRKYPTGLRANRATEAGYWKATGKDKEV 114
                        79*************************999.88***************988999************************************** PP

                NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++     +  lvg+kktLvfykgrap+g kt+Wvmheyrle
  GRMZM2G062650_P01 115 YNPfaaeGLLLVGMKKTLVFYKGRAPRGDKTNWVMHEYRLE 155
                        **976645555****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-5820198IPR003441NAC domain
PROSITE profilePS5100555.73224198IPR003441NAC domain
PfamPF023652.8E-2625154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MADQQQPQQQ PQEMDVDRTG GLELPPGFRF HPSDFEIIND YLTKKVHDRD YSCIAIADAD  60
LNKTEPWDLP KVAKMGEKEW YFFYQKDRKY PTGLRANRAT EAGYWKATGK DKEVYNPFAA  120
EGLLLVGMKK TLVFYKGRAP RGDKTNWVMH EYRLEGSGRL PASPASASGS ATNIAAAMMK  180
ASASACKDEW VVCRVFNKTT GIKKTAAPAY QVAMAGPEMD QNQNNIPAIP IPMPLQLPLP  240
VPMQMQFPIL PDFAMDPVAP YYPNPNAGAG MMPPMALAGM GGAGGLQING ALFGNPVPAP  300
LPMNFYHHQM GMGAAAGQVD MGAAAGQMDM GAAGAGAGGF DVAAPESRPS SMVSQKDEQA  360
NAAEISSMMS VTGPGSATTT IEMDGIWKYK Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-481520411174NAC domain-containing protein 19
3swm_B5e-481520411174NAC domain-containing protein 19
3swm_C5e-481520411174NAC domain-containing protein 19
3swm_D5e-481520411174NAC domain-containing protein 19
3swp_A5e-481520411174NAC domain-containing protein 19
3swp_B5e-481520411174NAC domain-containing protein 19
3swp_C5e-481520411174NAC domain-containing protein 19
3swp_D5e-481520411174NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.811350.0aleurone| embryo| endosperm| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G062650
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G062650_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277590.0KJ727759.1 Zea mays clone pUT5703 NAC transcription factor (NAC128) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673423.10.0NAM-related protein 1 isoform X1
RefseqXP_008673424.10.0NAM-related protein 1 isoform X1
TrEMBLA0A060D1R60.0A0A060D1R6_MAIZE; NAC transcription factor (Fragment)
STRINGGRMZM2G062650_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-71NAC domain containing protein 100
Publications ? help Back to Top
  1. Guo M,Rupe MA,Danilevskaya ON,Yang X,Hu Z
    Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm.
    Plant J., 2003. 36(1): p. 30-44
    [PMID:12974809]