PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

WRKY

Protein Properties

Length: 324aa MW: 34355.2 Da PI: 6.7921

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G061408_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	81.1	1.2e-25	138	199	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg +WrKYGqKe+ g+++pr+YYrC+++ gC+++k+v+r++edp++ +++Y+geH++ GRMZM2G061408_P01 138 VDDGRSWRKYGQKEILGAKHPRGYYRCSHRysqGCQATKQVQRTDEDPTLYDVIYHGEHTCA 199 58*************************99999***********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.7E-28	125	199	IPR003657	WRKY domain
PROSITE profile	PS50811	21.953	133	196	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-24	136	199	IPR003657	WRKY domain
SMART	SM00774	7.5E-38	138	200	IPR003657	WRKY domain
Pfam	PF03106	3.0E-25	139	198	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000037	anatomy	shoot apex
PO:0006340	anatomy	adult vascular leaf
PO:0006505	anatomy	central spike of ear inflorescence
PO:0009009	anatomy	plant embryo
PO:0009025	anatomy	vascular leaf
PO:0020040	anatomy	leaf base
PO:0020104	anatomy	leaf sheath
PO:0001052	developmental stage	vascular leaf expansion stage
PO:0001095	developmental stage	plant embryo true leaf formation stage
PO:0007006	developmental stage	IL.00 inflorescence just visible stage
PO:0007031	developmental stage	mid whole plant fruit ripening stage
PO:0007063	developmental stage	LP.07 seven leaves visible stage
PO:0007072	developmental stage	LP.18 eighteen leaves visible stage
PO:0007101	developmental stage	LP.09 nine leaves visible stage

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MATTETMEMG MGVVVDGVSS NGSGGCGGLV VTELSHIKEL VRQLEVHLGG SPDLCKHLAS 60 QIFSLTERSI GLITSSSSSS GLDGARRKRS AGDAGLASPL SATPTSGVTD GPFKNTKKRK 120 AMEQRRQRVS SAGGENPVDD GRSWRKYGQK EILGAKHPRG YYRCSHRYSQ GCQATKQVQR 180 TDEDPTLYDV IYHGEHTCAP HRPAAAEHNP DARGHLQTLS AGLTVKTEGL PDPPRGRGAA 240 TPLYLSASST PPSTSENWGV SPATSGSTHV ASFRPFEAAE WRGQAEHQEV VSALVAAIAP 300 PPAVDSLDDL LIDIDLDDIA SFFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-24	138	198	8	68	OsWRKY45
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G061408

Function -- GeneRIF ? help Back to Top
Maize terpenoid phytoalexin biosynthesis is regulated by the common transcription factor ZmWRKY79, which plays a broad role as a potential master regulator in stress response through involvement in phytohormone metabolism or signaling and ROS scavenging. [PMID: 29281032] The protein is localized in the nucleus. Expression of mRNA is up-regulated by treatment biotic and abiotic stresses and phytohormone treatment. [PMID: 29281032] The transient overexpression had no effect upon expression of Gene:100281196, Gene:542352, Gene:542720, Gene:542258, and Gene:732819. [PMID: 29281032] Transient overexpression of WRKY79 in protoplasts results in up-regulation of Gene:542165, Gene:541974, Gene:100274033, Gene:542688, Gene:542150, Gene:542151, Gene:100273457, Gene:100285509, Gene:103626248, Gene:103646045, Gene:100217270, Gene:100279981, Gene:100281950, Gene:542476, Gene:542369, Gene:100281950, and Gene:542260. [PMID: 29281032]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G061408_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035697	0.0	BT035697.1 Zea mays full-length cDNA clone ZM_BFb0078F13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001132026.2	0.0	uncharacterized protein LOC100193434
TrEMBL	K7UVX8	0.0	K7UVX8_MAIZE; Putative WRKY transcription factor 30
STRING	GRMZM2G025895_P01	0.0	(Zea mays)
STRING	GRMZM2G061408_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1086	38	131
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	2e-32	WRKY family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G061408_P01
Entrez Gene	100193434

Publications ? help Back to Top
Fu J, et al. ZmWRKY79 positively regulates maize phytoalexin biosynthetic gene expression and is involved in stress response. J. Exp. Bot., 2018. 69(3): p. 497-510 [PMID:29281032]