PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G061101_P01 | ||||||||
Common Name | LOC100193050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 352aa MW: 38968.7 Da PI: 7.027 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.8 | 8.9e-09 | 269 | 302 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps+ e++ LA+++gL+ +q+ +WF N+R ++ GRMZM2G061101_P01 269 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 302 59*****************************885 PP | |||||||
2 | ELK | 37.3 | 6e-13 | 222 | 243 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sL+ E+s GRMZM2G061101_P01 222 ELKNHLLNKYSGYLSSLWRELS 243 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.5E-19 | 83 | 127 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.1E-19 | 85 | 123 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.5E-27 | 132 | 183 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.6E-22 | 138 | 181 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.7E-10 | 222 | 243 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.58 | 222 | 242 | IPR005539 | ELK domain |
SMART | SM01188 | 2.8E-7 | 222 | 243 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.471 | 242 | 305 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-11 | 244 | 309 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.19E-18 | 244 | 311 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.37E-12 | 245 | 305 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 247 | 306 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.8E-16 | 262 | 301 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 280 | 303 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MHSSIPQTIK YPQIARWLAR MEKQLPALTG GSKAATTTPF YLALDHRAAA TSSSPPAEAP 60 TLPPSAAAVS DPSRQSNSDR GSEIIKAKIM SHPLYPALLR AFIDCRKVGA PLEIVGRLSA 120 LADDVETNSD GRQEEQPADP ELDQFMEIYC HMLVRYRQEL TRPIQEADEF FKSMEAQIDS 180 FSLDDNGYEE GGGSSDEDEQ ETVDLGGLPV PETGSPSGEG KELKNHLLNK YSGYLSSLWR 240 ELSRKKKKGK LPRDARQKLL HWWQLHYRWP YPSELEKAAL AESTGLDAKQ INNWFINQRK 300 RHWKPAPPTM ALGTPDYRMG QHGGGASSSS ASAGLRVQGQ YFTGGSSYPR GP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.6585 | 0.0 | endosperm| glume| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G061101 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G061101_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040622 | 0.0 | BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001336606.1 | 0.0 | uncharacterized protein LOC100193050 isoform 2 | ||||
Swissprot | Q75LX7 | 1e-141 | KNOS4_ORYSJ; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | B4FU34 | 0.0 | B4FU34_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G061101_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4746 | 29 | 50 |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 4e-77 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G061101_P01 |
Entrez Gene | 100193050 |