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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G059939_P02 |
Common Name | LOC100273875 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
RAV |
Protein Properties |
Length: 406aa MW: 42894.4 Da PI: 10.3152 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G059939_P02 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 39.4 | 1.5e-12 | 72 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++ a+++++g
GRMZM2G059939_P02 72 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAQRFRG 120
89****9888.8*********......44**********99*************98 PP
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2 | B3 | 93.5 | 1.4e-29 | 206 | 309 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78
f+k+ tpsdv+k++rlv+pk++ae+h +g + +++ l +ed g+ W+++++y+++s++yvltkGW++Fvk++gL +gD
GRMZM2G059939_P02 206 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaaaaagvgSGGECKGVLLNFEDAAGKAWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGD 297
89***************************9999999998844456999******************************************** PP
EEEEEE-SSSEE CS
B3 79 fvvFkldgrsef 90
v F+++ ++
GRMZM2G059939_P02 298 AVGFYRSAGGKQ 309
*****7754444 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MDSTSCLVDD ASSGASTGKK PAPAPAAATG KPLQRVGSGT SAVMDAAEPG AEADSGGAGR 60 APGGVSGKLP SSKYKGVVPQ PNGRWGAQIY ERHQRVWLGT FTGEAEAARA YDVAAQRFRG 120 RDAVTNFRPL AESEPEAAVE LRFLASRSKA EVVDMLRKHT YGEELAHNRR AFAAASPAAS 180 PPPENNRRPP AASSSSSPAA AREHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPAAA 240 AAGVGSGGEC KGVLLNFEDA AGKAWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVG 300 FYRSAGGKQQ LFIDCKLRPN KTTTTAAAFV NVNAMTTTAA PPLAAVKAVR LFGVDLLTTP 360 RPAAVAPEQE EVTVANKRAR DAMATAASTP APVHMVFKKQ CIDFAR
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT041962 | 0.0 | BT041962.2 Zea mays full-length cDNA clone ZM_BFb0089O18 mRNA, complete cds. |