PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G056929_P02 | ||||||||
Common Name | LOC103646512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | S1Fa-like | ||||||||
Protein Properties | Length: 80aa MW: 8867.6 Da PI: 10.4802 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 132.2 | 1.4e-41 | 11 | 80 | 2 | 70 |
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v ++e+ kGlnPG++vllvv+++ll+f+vgny++yvyaqk+lPP+kkkPvskkklkreklkqGv++PGe GRMZM2G056929_P02 11 NVIIEEVnKGLNPGMVVLLVVASFLLLFFVGNYAMYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80 55667778*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 2.0E-7 | 12 | 80 | No hit | No description |
Pfam | PF04689 | 9.2E-39 | 16 | 80 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 80 aa Download sequence Send to blast |
MADQFVDSAN NVIIEEVNKG LNPGMVVLLV VASFLLLFFV GNYAMYVYAQ KTLPPKKKKP 60 VSKKKLKREK LKQGVSAPGE |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.94680 | 1e-113 | ear| embryo| endosperm| meristem| ovary| pedicel| root| sheath| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G056929 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G056929_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU958788 | 1e-124 | EU958788.1 Zea mays clone 207858 DNA-binding protein S1FA2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001316616.1 | 1e-50 | DNA-binding protein S1FA | ||||
Swissprot | Q7XLX6 | 3e-33 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A1D6EBT5 | 3e-49 | A0A1D6EBT5_MAIZE; DNA-binding protein S1FA | ||||
STRING | GRMZM2G056929_P02 | 5e-50 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5154 | 35 | 63 |
Representative plant | OGRP5095 | 13 | 22 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G056929_P02 |
Entrez Gene | 103646512 |
Publications ? help Back to Top | |||
---|---|---|---|
|