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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G056400_P01 |
Common Name | kan1, Zm.41375 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
G2-like |
Protein Properties |
Length: 458aa MW: 47557.7 Da PI: 8.7102 |
Description |
G2-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G056400_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 101.6 | 5.1e-32 | 252 | 305 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
GRMZM2G056400_P01 252 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 305
9****************************************************7 PP
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Plant Ontology ? help Back to Top |
PO Term |
PO Category |
PO Description |
PO:0006339 | anatomy | juvenile vascular leaf |
PO:0006340 | anatomy | adult vascular leaf |
PO:0008018 | anatomy | transition vascular leaf |
PO:0009025 | anatomy | vascular leaf |
PO:0020040 | anatomy | leaf base |
PO:0025142 | anatomy | leaf tip |
PO:0001052 | developmental stage | vascular leaf expansion stage |
PO:0001053 | developmental stage | vascular leaf post-expansion stage |
PO:0007001 | developmental stage | early whole plant fruit ripening stage |
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage |
PO:0007063 | developmental stage | LP.07 seven leaves visible stage |
PO:0007065 | developmental stage | LP.05 five leaves visible stage |
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage |
PO:0007101 | developmental stage | LP.09 nine leaves visible stage |
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
Protein Sequence Length: 458 aa
Download sequence Send
to blast |
MEARAASVPD LSLHISLPSS AASPSPAPGL GAGGVGRGAQ PSGGDPWRRL NGSTASTELS 60 LSPPPPRQEA AAGDVLPWRL RPPAANYSSS TAEATFLPVT VPRLSFDAAA EAAPARPING 120 VPVYSSPRTG AAHPFLGAGG EYRQCHHHKA AVGLYNPYHS SSSWPSSLRS TTTAPLGAVA 180 PPASDPTASS YLSPSAYHRM LSSTGRLHLQ GVLADTLRGY GSGHHHRQHL GSLAAARYMP 240 RLPASRRGMR APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL 300 QMYRTVKSTD KPPAATSSGG GGPPVDGGGG SGDDDHPSDW RRAPSSSAGR DVSPQAFTGH 360 RSASSDGAAS HAGGDVECSS ADDSDGGRPR SASPPRLPPP SACNAADTLH SVGVPYSTTE 420 DMEPACRSAG LQHSLNHEMS CPPSLEFTLG RPNWNGAE
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j4r_A | 4e-16 | 253 | 307 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-16 | 253 | 307 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-16 | 253 | 307 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-16 | 253 | 307 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU935003 | 0.0 | EU935003.1 Zea mays cultivar B73 kanadi1 (kan1) mRNA, complete cds. |