PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G048987_P02
Common NameLOC103633222, Zm.4139
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 779aa    MW: 88945.9 Da    PI: 6.9118
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G048987_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.15.2e-2254140290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         Y++Y++++GFsvrk k+++   +++i +++++Cskeg + +e  +  +++ +r+ trt+Cka+++ + +++g+w v++++  HnH+la
  GRMZM2G048987_P02  54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPVHNHQLA 140
                        7********************9*******************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-2054140IPR004330FAR1 DNA binding domain
PfamPF105513.2E-33261354IPR018289MULE transposase domain
PROSITE profilePS509669.186542578IPR007527Zinc finger, SWIM-type
PfamPF044345.6E-6544575IPR007527Zinc finger, SWIM-type
SMARTSM005757.6E-6553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MDCSQDPQEE SHQRRENGEE AEKTADYGNA LSRKEVTEEL LGCVVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAVGKSG VIDPLASTEA HPINGFSDMT  180
GDIVENSGYT IRECYNQVGM QSITVIEAGD SQSLVSYFKH KTNEEGMFYW DVQVDQEGRM  240
TNFFYRDGKS RNDYGCFGDA IIFDTTYRTN KYNLICAPFV GVDHHWQNVV FGCAFLLDES  300
VTSYAWVFKS FLESMGGRSP KSIFTDQDEA IMQAVKQVFP NTQHCFSYWH ILKNAQSHLG  360
SLNTSQAFQS MFTKCMQGSD SEEDFKESWT AMIQEYKLQD NNWLIDLYTF HHKWCSAFNK  420
DTFDGGINSS QWGEVSSNIL NGISDENTSL TRFALLLEKV VKDLRRNESE EDFRCSQTAP  480
VRAIKHSTVL KQAAESYTHR IYKLFEAEFL DGCGATSCHE TSSGGNLLRF GITMQGRGSK  540
VWDVVLDTST MEISCGCRKF ERMGLLCSHA LKVFTLQNVD TIPEKYVLKR WTKDARRSMY  600
TLAQDDSTQQ ECTEAELAYR NRAMQYAYNL IIKSQELEES RKIFWDSLET GEKALEVFFE  660
MRNMRTQAAK DADKNVKKKK KTSKGTNPKK AKQAPGVSST GPELIVHTNE HQFQSSQDAQ  720
GNATIGRPYY YQAFPNAPIQ PNQMYMHTNM HTMPLCTPQE LSAYAAIRPN SMFGGAKNI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.41390.0ear| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G048987
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G048987_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001337121.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020397399.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_020397400.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A1B6QEH50.0A0A1B6QEH5_SORBI; Uncharacterized protein
STRINGGRMZM2G048987_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-101FAR1-related sequence 5