PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G045109_P01
Common NameLOC103638524, ZEAMMB73_486541, Zm.102913
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 362aa    MW: 38672.2 Da    PI: 7.8475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G045109_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.2e-1499149255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  GRMZM2G045109_P01  99 KTSHITVERNRRKQMNEHIAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 149
                        799*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.62197148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-1499153No hitNo description
Gene3DG3DSA:4.10.280.101.9E-1499161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1799176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-1199149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAEALCDQLF SDIDGDLMRQ HTSDTDDLLG ILESWEDCVS GGVATTPCGA EVPQTTAADG  60
AAKRRRQGCR DVDAVPAAPK RQKCSPVSSA ASEDGAVNKT SHITVERNRR KQMNEHIAVL  120
RSLMPCFYVK RGDQASIIGG VVDYIKELQQ VLQSLEAKKQ RKAYTEQVLS PRPPACCSPR  180
PPLSPRPHML PLKSTPPISP RPAVPISPRT PPAPSSPYKP CRLPPPGSSA YASPAMTTTR  240
EPTAATYLPS LDTIAADLCA YAANKNKQLQ ALAAAAGGDV VLPDVKVEFS GANLVVKTVS  300
HRAPGQTVKV IAALEGRSLE ILDAKINTIN DTAVNSYTIK IGIKCELSAE ELVQEIQEAF  360
SS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G045109
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G045109_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659639.10.0transcription factor SPEECHLESS
TrEMBLA0A1D6P0V80.0A0A1D6P0V8_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G045109_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-75bHLH family protein