PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G044902_P02
Common NameLOC100193187
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 323aa    MW: 35356.5 Da    PI: 12.3358
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G044902_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26046.79.1e-15266160
             DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamss 60
                       +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ +l++++a+p+ +r+ ++ s
  GRMZM2G044902_P02  2 SCNGCRVLRKGCSEACVLRPCLqwidaAEAQGHATVFVAKFFGRAGLLSFISAVPDAQRPGLLWS 66
                       6*********************9998666789***************************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.251108IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-12267IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEACVLR PCLQWIDAAE AQGHATVFVA KFFGRAGLLS FISAVPDAQR  60
PGLLWSMAPP RSPVPVAAVR GGGADHQPGA RRGGAAGHGE LAPLPGRRRH RAAGRRHRPA  120
AGAWRRDGPP VRAPRRHRQA RRRLVHLLHG EAGAEGRRRC RGAARGGGGG VLRPRAVPQQ  180
QPRVPAGDGG REEGPPPAAR HAVHELGRVR HDHGRRRQGA RAAQPFCLMK PPVDDAGQTK  240
PNHTRSGSLD WPPCDVMFCL DDLSRRPGVF SRRRRRQGRF SFVSGCGLRF YFWLRSSGSR  300
KETTSSSRSR PRSPVCVWAK MRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108117RHRAAGRRHR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.346920.0endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G044902
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G044902_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0614040.0BT061404.1 Zea mays full-length cDNA clone ZM_BFb0142P04 mRNA, complete cds.
GenBankEU9740680.0EU974068.1 Zea mays clone 438955 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131814.11e-177uncharacterized protein LOC100193187
TrEMBLB6UA030.0B6UA03_MAIZE; LOB domain-containing protein 38
STRINGGRMZM2G044902_P011e-176(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-34LOB domain-containing protein 37
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]