PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G044902_P01
Common NameLOB14, LOC100193187
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 329aa    MW: 36067.4 Da    PI: 12.2406
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G044902_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26045.81.7e-14262156
             DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56
                       +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ +l++++a+p+ +r++
  GRMZM2G044902_P01  2 SCNGCRVLRKGCSEACVLRPCLqwidaAEAQGHATVFVAKFFGRAGLLSFISAVPDAQRPA 62
                       6*********************9998666789**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.411110IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-11262IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0020127anatomyprimary root
PO:0025287anatomyseedling coleoptile
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEACVLR PCLQWIDAAE AQGHATVFVA KFFGRAGLLS FISAVPDAQR  60
PAYYCLPGLL WSMAPPRSPV PVAAVRGGGA DHQPGARRGG AAGHGELAPL PGRRRHRAAG  120
RRHRPAAGAW RRDGPPVRAP RRHRQARRRL VHLLHGEAGA EGRRRCRGAA RGGGGGVLRP  180
RAVPQQQPRV PAGDGGREEG PPPAARHAVH ELGRVRHDHG RRRQGARAAQ PFCLMKPPVD  240
DAGQTKPNHT RSGSLDWPPC DVMFCLDDLS RRPGVFSRRR RRQGRFSFVS GCGLRFYFWL  300
RSSGSRKETT SSSRSRPRSP VCVWAKMRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114123RHRAAGRRHR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.346920.0endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G044902
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G044902_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353850.0BT035385.1 Zea mays full-length cDNA clone ZM_BFb0058L02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131814.10.0uncharacterized protein LOC100193187
TrEMBLB4FE470.0B4FE47_MAIZE; LOB domain-containing protein 38
STRINGGRMZM2G044902_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-34LOB domain-containing protein 37
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]