![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G044824_P01 | ||||||||
Common Name | MYB148, ZEAMMB73_875368, Zm.13889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 376aa MW: 38845.6 Da PI: 7.25 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.4e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd+++ G g+W++ +++ g++R++k+c++rw +yl GRMZM2G044824_P01 15 KGPWTPEEDKLLVDYINGNGHGSWRRLPKHAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.5e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T +E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l GRMZM2G044824_P01 68 RGRFTDDEEKLIIHLHSLLGNK-WSAIATKLP-GRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.883 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.44E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.203 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-12 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MGRSPCCDQD AGVKKGPWTP EEDKLLVDYI NGNGHGSWRR LPKHAGLNRC GKSCRLRWTN 60 YLRPDIKRGR FTDDEEKLII HLHSLLGNKW SAIATKLPGR TDNEIKNYWN THLRKKLLAM 120 GIDPVTHQRR TDLNLLAAGG FTNLLAAANL AAAAAGGGQA AGPGGPLAAA HASSCWDINA 180 LRLQADAAKY QLLEGLVRVL TAPAAPTVDL MSLLAAANNG GAPSGGGGHQ QLLAGVDQST 240 ASRVVQQYDG MLSLPALTSA VPAVTQGMPS SSAYSLSGLL NGFSGGAGTT AAFAGDGLSS 300 TELGHSGATT GSNVTAAAMP PPLAAAAKGC SAGNGGATSS TPSPYEETPA SSPFDGLDSL 360 TLDFDPNNDS WRELLE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 15 | 117 | 7 | 108 | B-MYB |
1gv2_A | 3e-30 | 15 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-30 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-30 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G044824 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G044824_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727665 | 0.0 | KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659377.1 | 0.0 | transcription factor MYB2 | ||||
Swissprot | Q8GWP0 | 8e-77 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | K7V7T9 | 0.0 | K7V7T9_MAIZE; MYB transcription factor | ||||
STRING | GRMZM2G044824_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5529 | 31 | 58 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-75 | myb domain protein 93 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G044824_P01 |