![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G042895_P01 | ||||||||
Common Name | LOC100284818, ZEAMMB73_501352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 28188.8 Da PI: 4.6249 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.3e-13 | 76 | 120 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+++N+++ Lr+++P+ +K++Ka+i + A+eYI +Lq GRMZM2G042895_P01 76 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 120 579*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.113 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-16 | 73 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.77E-15 | 74 | 124 | No hit | No description |
Pfam | PF00010 | 7.9E-11 | 75 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-15 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-15 | 76 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MEMGDSFEYY WEMQQYLESE ELSLYMGTQD DALSCYDSSS PDGSISNSSW APAGVAATAS 60 EKREGPGGAA AANKNILMER DRRRKLNEKL YALRSVVPNI TKMDKASIIK DAIEYIEQLQ 120 AEERRALQAL EAGEGARCGG HGHGEEARVV LQQPAAAPAP VEVLELRVSE VGDRVLVVNV 180 TCSKGRDAMA RVCRAVEELR LRVITASVTS VAGCLMHTIF VEVDSDQTNR IQIKHMIEAA 240 LAQLDDASAS PPSVMSYY |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.97500 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G042895 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G042895_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727967 | 0.0 | KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151185.2 | 0.0 | DNA binding like | ||||
TrEMBL | K7UFH5 | 0.0 | K7UFH5_MAIZE; Putative HLH DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G042895_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29930.2 | 8e-30 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G042895_P01 |
Entrez Gene | 100284818 |
Publications ? help Back to Top | |||
---|---|---|---|
|