![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G042893_P05 | ||||||||
Common Name | LOC100193646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 382aa MW: 41537.3 Da PI: 7.8873 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.3e-12 | 94 | 137 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+++N+++ Lr+++P+ +K++Ka+i++ A+ +I +Lq GRMZM2G042893_P05 94 DMERTRRRKLNERLYALRSVVPNI-----TKMDKASIVRDAIAHIEHLQ 137 69*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.548 | 87 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-16 | 90 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-15 | 93 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-10 | 94 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.02E-14 | 94 | 141 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.0E-15 | 95 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 382 aa Download sequence Send to blast |
MEADSMVAMG CGGFYWQSPP RFLLEPLDLA DIVDSSMYVP TNEADEPVSG LCSSNRPAED 60 YSSSAEGANS CSAAVVPSPP PPPGVTTTTT RNMDMERTRR RKLNERLYAL RSVVPNITKM 120 DKASIVRDAI AHIEHLQEQE RRLLAEISVL QSSDDGTAAA AAVKTEDAAA TGGAAYDVDS 180 VPWRKKPRAV PLPSVYFTDN PTSSISSSPP VRILEVQVSQ AGERVAVVSL WCSRGRDAVG 240 KICLALEPLR LRVVTATITA RGDTVFHTLF VEVIKQPANY SLPHDGNYCG CPCTCACLPE 300 KSASALANRW RHRGDVARDD VRNGAPLWLS SSSFRQKLGA GVDVGLEVSS VLADRRLVKY 360 VKFLRGKRAR DILYFVLLTV KD |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.23956 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G042893 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G042893_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT035971 | 0.0 | BT035971.1 Zea mays full-length cDNA clone ZM_BFb0090D10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132214.1 | 0.0 | uncharacterized protein LOC100193646 | ||||
TrEMBL | B4FFT3 | 0.0 | B4FFT3_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G042893_P05 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.2 | 2e-36 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G042893_P05 |