PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G040349_P01
Common NameLOC100194182
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 300aa    MW: 32759.3 Da    PI: 9.1105
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G040349_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1063.2e-33154210158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq+Rakle+++k+  k+rkpylheSRh+hA++R+RgsgGrF
  GRMZM2G040349_P01 154 EEPIYVNAKQYHAILRRRQTRAKLEAQNKM-VKNRKPYLHESRHRHAMKRARGSGGRF 210
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-37152213IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.024153213IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.6E-29155210IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-25156178IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860158178IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-25187210IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MPVILREMED HSVHPMSKSN HGSLSGNGYE MKHSGHKVCD RDSSSESDRS HQEASAASES  60
SPNEHTSTQS DNDEDHGKDN QDTMKPVLSL GKEGSAFLAP KLHYSPSFAC IPYTSDAYYS  120
AVGVLTGYPP HAIVHPQQND TTNTPGMLPV EPAEEPIYVN AKQYHAILRR RQTRAKLEAQ  180
NKMVKNRKPY LHESRHRHAM KRARGSGGRF LNTKQLQEQN QQYQASSGSL CSKIIANSII  240
SQSGPTCTPS SGTAGASTAG QDRSCLPSVG FRPTTNFSDQ GRGGLKLAVI GMQQRVSTIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-24154233278NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194203RHRHAMKRAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.854460.0ear| embryo| endosperm| meristem| pedicel| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G040349
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G040349_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0366480.0BT036648.1 Zea mays full-length cDNA clone ZM_BFb0127N08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132701.10.0nuclear transcription factor Y subunit A-3
RefseqNP_001345836.10.0nuclear transcription factor Y subunit A-3
RefseqXP_008667276.10.0nuclear transcription factor Y subunit A-3 isoform X2
RefseqXP_008667277.10.0nuclear transcription factor Y subunit A-3 isoform X2
TrEMBLB4FHR00.0B4FHR0_MAIZE; Nuclear transcription factor Y subunit A-3
STRINGGRMZM2G040349_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Representative plantOGRP1192546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-37nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]