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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G039889_P04 | ||||||||
Common Name | ZEAMMB73_943527, Zm.67905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 170aa MW: 18674.3 Da PI: 8.4063 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.6e-11 | 74 | 98 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+a+tG Ck+G+ CkF+H++ GRMZM2G039889_P04 74 EPICVFYAKTGKCKFGAICKFNHPK 98 799********************96 PP | |||||||
2 | zf-CCCH | 39.3 | 1.1e-12 | 136 | 160 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG CkyG+ C+F+H+ GRMZM2G039889_P04 136 GEVDCSFYMKTGSCKYGSICRFNHP 160 6899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.21 | 20 | 46 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.263 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 71 | 99 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 71 | 99 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-8 | 74 | 98 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 76 | 97 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-10 | 136 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 138 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-5 | 140 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MSARDDPRKA PNVEDSYPER PGEPDCPYLL NNRCKFKSKC KFNHPKDMVN ALGTGTNNES 60 LIADSAVLPV RPSEPICVFY AKTGKCKFGA ICKFNHPKDI KTSPLIAKET IYTATTDAAD 120 APTEACNAKG LPIRQGEVDC SFYMKTGSCK YGSICRFNHP DRPGPGLFFS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.67905 | 0.0 | ear| embryo| endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G039889 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G039889_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064944 | 0.0 | BT064944.1 Zea mays full-length cDNA clone ZM_BFc0042H04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001346414.1 | 1e-118 | uncharacterized protein LOC100216717 | ||||
Swissprot | Q5ZDJ6 | 4e-61 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | C0P9H5 | 1e-122 | C0P9H5_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G039889_P06 | 1e-112 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 3e-47 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G039889_P04 |
Publications ? help Back to Top | |||
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