PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G037493_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 214aa    MW: 24343.3 Da    PI: 8.5688
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G037493_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.72.7e-171881163
           trihelix  1 rWtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykk 63
                       +W  qe+++Li ar em+++  +++ ++k+ We+++++++erg++r+++qCk+ w+nl + yk+
  GRMZM2G037493_P01 18 QWGAQETRELIMARGEMGRETVAACrSAKTMWEAIAARLQERGYRRTAEQCKCNWKNLVNCYKE 81
                       7*****************9999875388**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.47E-181781No hitNo description
PfamPF138375.5E-141881No hitNo description
Gene3DG3DSA:1.10.10.603.1E-51877IPR009057Homeodomain-like
PROSITE profilePS500908.0261976IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MMEVGGAGAG GRDERVPQWG AQETRELIMA RGEMGRETVA ACRSAKTMWE AIAARLQERG  60
YRRTAEQCKC NWKNLVNCYK EGIKNWKFHV RFRLTLLLGW SGGERNFCDE DLAIFYDGGR  120
LGIEGVNGDA CGFDQFNLGK RGRDEYSITN TMNIAFGLYS SQVRVYRGGS SRSASRSSHR  180
STQDPAEVEQ LREELRRHQD YLKQQAAQLE YYAT
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G037493
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G037493_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9631541e-106EU963154.1 Zea mays clone 258384 transcription factor GT-3b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6KII07e-71A0A1D6KII0_MAIZE; Uncharacterized protein
STRINGGRMZM2G037493_P011e-158(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.13e-16Trihelix family protein