PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G037200_P02
Common NameLOC100192554
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 427aa    MW: 46033.5 Da    PI: 7.9178
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G037200_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07104127326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +++C++f+++ +C+yG+rC++ H+
  GRMZM2G037200_P02 104 ERPCKYFLAGTECSYGERCRYPHS 127
                        68*******55**********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.2582854IPR000571Zinc finger, CCCH-type
SMARTSM003560.12953IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14101129IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-5104127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4105127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5106136IPR000571Zinc finger, CCCH-type
SMARTSM003206.5E-6133172IPR001680WD40 repeat
SuperFamilySSF509782.47E-46135421IPR017986WD40-repeat-containing domain
PfamPF004003.2E-6139172IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.109.0E-45139420IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008214.318140181IPR001680WD40 repeat
PROSITE profilePS5029419.986140389IPR017986WD40-repeat-containing domain
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
PRINTSPR003202.7E-7159173IPR020472G-protein beta WD-40 repeat
SMARTSM0032031212249IPR001680WD40 repeat
SMARTSM003200.0093256293IPR001680WD40 repeat
PfamPF004000.029261293IPR001680WD40 repeat
PROSITE profilePS5008211.143263302IPR001680WD40 repeat
PRINTSPR003202.7E-7280294IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780280294IPR019775WD40 repeat, conserved site
SMARTSM003202.1E-4296333IPR001680WD40 repeat
PfamPF004000.0093298332IPR001680WD40 repeat
PRINTSPR003202.7E-7320334IPR020472G-protein beta WD-40 repeat
SMARTSM0032025337380IPR001680WD40 repeat
SMARTSM0032017383420IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDIEADGRFG NKRVHNRLGP GSGGAPPSTN GKVCNYWRAG RCNRFPCPFL HSELPEAAPP  60
KRPTGPGGNV WRNPNTGGRG GGHHNRWGKG PGGGSGIASH KPPERPCKYF LAGTECSYGE  120
RCRYPHSYCI SDSIAMLTLL KGHEQGVTGI ALPAGSDKLY SGSKDGTVRM WDCQTGQCAG  180
VITMGREVGC MIIEGPWLFV GIPDAVKVWN MQTAAEMSLT GPTGQVYALA VASELLFAAT  240
QAGRILAWRF SAATNCFEPA ASLDGHKLAV VSLIVGGMRL YSASMDKTIR VWDLATLQCI  300
QTLSDHTDVV MSVLCWDQFL LSCSLDQTIK VWAATESGNL EVTYTHKEDQ GALALSGMPD  360
AQSKPVLLCS LNDNTVRLYD LPSFSDRGRL FSKKEIRAIQ MGPGGLFFTG DGTGELKVWQ  420
WVDLAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A9e-201374198320Tako8
6g6n_A9e-201374198320Tako8
6g6n_B9e-201374198320Tako8
6g6n_C9e-201374198320Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.961470.0ear| embryo| meristem| ovary| root| sheath| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G037200
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G037200_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0345660.0BT034566.1 Zea mays full-length cDNA clone ZM_BFb0001E08 mRNA, complete cds.
GenBankEU9720870.0EU972087.1 Zea mays clone 374674 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131242.10.0nucleic acid binding protein
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLB4FBS80.0B4FBS8_MAIZE; Nucleic acid binding protein
TrEMBLK0DCU60.0K0DCU6_MAIZE; C3H34 C3H type transcription factor (Fragment)
STRINGGRMZM2G037200_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]