PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G036703_P01
Common NameZEAMMB73_953393
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 593aa    MW: 62785.6 Da    PI: 6.8336
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G036703_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.79.9e-33246302259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK++kgse+prsYY+Ct++gCp+kkkvers  d++++ei+Y+g+Hnh 
  GRMZM2G036703_P01 246 DDGYNWRKYGQKQMKGSENPRSYYKCTFPGCPTKKKVERSL-DGQITEIVYRGTHNHA 302
                        8****************************************.***************7 PP
2WRKY103.41.2e-32411469159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+ +d ++v++tYeg+Hnh+
  GRMZM2G036703_P01 411 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERACHDLRAVITTYEGKHNHD 469
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-28237304IPR003657WRKY domain
PROSITE profilePS5081124.007240304IPR003657WRKY domain
SuperFamilySSF1182905.75E-25241304IPR003657WRKY domain
SMARTSM007741.0E-35245303IPR003657WRKY domain
PfamPF031064.7E-25246301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36396471IPR003657WRKY domain
SuperFamilySSF1182903.79E-29403471IPR003657WRKY domain
PROSITE profilePS5081138.056406471IPR003657WRKY domain
SMARTSM007742.4E-37411470IPR003657WRKY domain
PfamPF031066.4E-25412469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MTTSSSGSIE APANSRPGSF AFASTSTSTS TSFTDMLGGS TDAAGGASRY KAMTPPSLPL  60
SPSSFFSNNP GGLNPADFLD SPALFSSSCS GARCRAAHVP GNANALCTFQ IFTSPTTNAF  120
ASQQFSWLAT SGAEQSGKDE RRPSSYPDFS FQTAPTTEEA VRTTTTFQPP IPAASLGEEA  180
YRSQQQQPWA YQQQQPGMDA GSSQQAAPYG EPFQAASSDA ATMAPHVPAS GGYSHQAQQS  240
QRQSSDDGYN WRKYGQKQMK GSENPRSYYK CTFPGCPTKK KVERSLDGQI TEIVYRGTHN  300
HAKPQNTRRN SSAAAQLLQS GGGDASEHSF GGMLGTPVAT PENSSASFGD EEAGVGSPRA  360
GGNAGGDEDE PDSKRWRKDG DGVGEGISMA ANRTVREPRV VVQTMSDIDI LDDGYRWRKY  420
GQKVVKGNPN PRSYYKCTTP GCPVRKHVER ACHDLRAVIT TYEGKHNHDV PAARGSAALY  480
RPAPPPGDNA GHYLGGAAGA AQTGMAYQLA GQQYGFGGQL GSFGLSGGAP AQSSGPSGSL  540
ALSSGFDNPM PMGSLYMSQS QQQGQHDAMH APRAKEEPRE EDMFFQQSMV YTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37246472878Probable WRKY transcription factor 4
2lex_A6e-37246472878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.795580.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G036703
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G036703_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539940.0BT053994.1 Zea mays full-length cDNA clone ZM_BFc0103O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657109.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLK7V3U50.0K7V3U5_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G036703_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-96WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]