PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G035944_P01 | ||||||||
Common Name | LOC100194214, TCP7, ZEAMMB73_120862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 275aa MW: 29585.3 Da PI: 9.4114 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.2 | 5.5e-29 | 56 | 124 | 3 | 71 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ GRMZM2G035944_P01 56 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPQA 124 78*************************************************************998882 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.688 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-26 | 57 | 118 | IPR005333 | Transcription factor, TCP |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MISGNLTNED LGAGRTKAEG PTTAARAVAK SPVLPSSRHW PPSTESRIVR VSRVFGGKDR 60 HSKVRTVKGL RDRRVRLSVP TAIQLYDLQD RLGLSQPSKV VDWLLDAAQH EIDKLPPLQF 120 PPQAAQDLVA HLPPPSMVAP FAADRAEADG DKRHCHAGVK GLMGLNNSIR LVNATMPLAH 180 GLYYTPGESW TGTNADDAAA HDHQTVAHGH SPFSSLLSLA APGPQLVFYS SEGGGFTMKE 240 EATGYQFPVQ NSLDHSQGQL SLSSARSFLR PGNQV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G035944 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G035944_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT036694 | 0.0 | BT036694.1 Zea mays full-length cDNA clone ZM_BFb0132C18 mRNA, complete cds. | |||
GenBank | BT068942 | 0.0 | BT068942.2 Zea mays full-length cDNA clone ZM_BFc0170I14 mRNA, complete cds. | |||
GenBank | BT069279 | 0.0 | BT069279.2 Zea mays full-length cDNA clone ZM_BFc0043P12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001339734.1 | 0.0 | uncharacterized protein LOC100194214 | ||||
TrEMBL | B4FHV6 | 0.0 | B4FHV6_MAIZE; TCP transcription factor | ||||
STRING | GRMZM2G035944_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-35 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G035944_P01 |
Entrez Gene | 100194214 |