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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G035701_P01 |
Common Name | ABI19, ZEAMMB73_436245, Zm.13587 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
B3 |
Protein Properties |
Length: 292aa MW: 32431.6 Da PI: 7.7508 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G035701_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 58.4 | 1.3e-18 | 74 | 170 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86
+k+l +sdv+++gr+vlpkk ae++ + k +k l + d ++++ W++k++y ++ks++yvl+ ++ ++vka++L++gDf+v++ d+
GRMZM2G035701_P01 74 QKELRNSDVSQLGRIVLPKKEAESYlpilMAK--DGKSLCMHDlLNSQLWTFKYRYwfNNKSRMYVLE-NTGDYVKAHDLQQGDFIVIYKDD 162
7999***********************87434..5678*****8899*******9999999999***9.********************444 PP
SSEE..EEE CS
B3 87 rsefelvvk 95
++ ++v++
GRMZM2G035701_P01 163 -ENNRFVIG 170
.55555665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008284 | Biological Process | positive regulation of cell proliferation |
GO:0009733 | Biological Process | response to auxin |
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process |
GO:0010262 | Biological Process | somatic embryogenesis |
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MAGITKRRTS PASTSSSSGD VLPQRVTRKR RSARRGPRST ARRPSAPPPM NELDLNTAAL 60 DPDHYATGLR VLLQKELRNS DVSQLGRIVL PKKEAESYLP ILMAKDGKSL CMHDLLNSQL 120 WTFKYRYWFN NKSRMYVLEN TGDYVKAHDL QQGDFIVIYK DDENNRFVIG AKKAGDEQTA 180 TVPQVHEHMH ISAALPAPQA FHDYAGPVAA EAGMLAIVPQ GDEIFDGILN SLPEIPVANV 240 RYSDFFDPFG DSMDMANPLS SSNNPSVNLA THFHDERIGS CSFPYPKSGP QM
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j9b_A | 5e-41 | 69 | 184 | 1 | 116 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 5e-41 | 69 | 184 | 1 | 116 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in anthers, pollen grains and young developing embryos. {ECO:0000269|PubMed:17913295}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727970 | 0.0 | KJ727970.1 Zea mays clone pUT6084 ABI3VP1 transcription factor (ABI19) mRNA, partial cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Yang J, et al.
OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice. Plant J., 2013. 73(4): p. 566-78 [PMID:23083333] - Guo X, et al.
The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism. Plant J., 2013. 75(3): p. 403-16 [PMID:23581288] - Matsuno K,Fujimura T
Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds? Mol. Genet. Genomics, 2015. 290(4): p. 1551-62 [PMID:25732383]
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