PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G035405_P02
Common NameARF18, LOC100502480
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 739aa    MW: 81995.3 Da    PI: 6.9865
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G035405_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.3e-172613899
                       EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  GRMZM2G035405_P02  2 AKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNNQLLLGIRRA 61
                       589*******************************************..7777778***9997 PP
2Auxin_resp117.61e-3886169183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaast+s F+++YnPras+seFv+++ k++ka++ +++svGmRf+m fete+ss rr++Gt++g+ dld+vrWpnS+Wrs+k
  GRMZM2G035405_P02  86 AAHAASTNSRFTIFYNPRASPSEFVIPLVKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVK 169
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.887162IPR003340B3 DNA binding domain
SuperFamilySSF1019363.79E-21289IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-23275IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-12360No hitNo description
PfamPF023629.8E-15361IPR003340B3 DNA binding domain
PfamPF065076.6E-3486169IPR010525Auxin response factor
SuperFamilySSF542779.81E-8597682No hitNo description
PROSITE profilePS5174523.318606690IPR000270PB1 domain
PfamPF023091.6E-5652692IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND NNQLLLGIRR  60
ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA STNSRFTIFY NPRASPSEFV IPLVKYVKAV  120
YHTRISVGMR FRMLFETEES SVRRYMGTIT GICDLDSVRW PNSHWRSVKV GWDESTAGER  180
QPRVSLWEIE PLTTFPMYPS PFPLRLKRPW PTGLPSLHGG KDDDLANSLM WLRDTANPGF  240
QSLNFGGLGM SPWMQPRLDA TLLGLQPDMY QAMATAAFQD ATKQASPTML QFQQPQNIAG  300
RASPLLSSQI LQQAHHQFQQ QPYLQNISES TIQAQGQSEF LKQQIQRSQS FNEQKPQMQH  360
QQESQQQQQP QCLPVPQHQQ MQQQNMTNYQ SISNALSPFS QLSPVSQSSP MALQTILPFS  420
QAQSFTDTNV GSLSPSNGNT MQNTLRPFSS EAVSHLSMPR PTAIPVADPW SSKRVAVESL  480
LPSRPQVSSQ MEQLDPAPAS IPHSSALAPL PGRGCLVDQD VNSDPQNHLL FGVSIDSQSL  540
LMQGGIPGLQ NGNDSAAIPY STSNFLSPSQ NDFPLDHTLN SSGCLDDSGY VPPCSDNSDK  600
VNRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLEDPL RSGWQLVFVD  660
REEDVLLVGD DPWQEFVSTV SCIKILSPQE VQQMGKQGLE LLSSAPARRL GSSCDDYVSR  720
QESRSLSTGI ASVGSVELG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-791190199388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.823940.0cell lignification| endosperm| meristem| ovary| root| shoot| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G035405
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G035405_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268160.0KJ726816.1 Zea mays clone pUT3355 ARF transcription factor (ARF18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333731.10.0uncharacterized protein LOC100502480
RefseqXP_008644237.10.0uncharacterized protein LOC100502480 isoform X1
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A1D6GSS00.0A0A1D6GSS0_MAIZE; Auxin response factor
TrEMBLA0A3L6ETW60.0A0A3L6ETW6_MAIZE; Auxin response factor
STRINGGRMZM2G035405_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.11e-166auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]