PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G035370_P03 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | G2-like | ||||||||
Protein Properties | Length: 278aa MW: 29869.5 Da PI: 7.4768 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 36.1 | 1.4e-11 | 249 | 273 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r+rWt++LHerFv+ v+qLGG++ GRMZM2G035370_P03 249 KTRIRWTQDLHERFVDSVNQLGGAD 273 68*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-9 | 248 | 274 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MMDAKKIKLH DYHLYGSQQL FPAAGGLSFH PAAGLMSSLP QPPHAAWLHE DHHTTTPRSV 60 LATHGSLQGS RCVGSDAAAF FAAEELMMGM PRFDDCPLGG TEMTAFAKRP TTEDEQLHYR 120 RPGPVDPLPL RDSAAVRTYY VRPQQRDGAT EAPPSLELPF QQGRRQQQQL FGNASTGRLL 180 GGEPKAHSFT AHVATSTLLP AMEAPAGMQQ SPTENPLSRS CSTIGAPATH VGSGNVAAAA 240 APGHGAPSKT RIRWTQDLHE RFVDSVNQLG GADSERRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.21013 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G035370 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G035370_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668740.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X5 | ||||
Refseq | XP_020403667.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X5 | ||||
TrEMBL | A0A1D6DUN2 | 0.0 | A0A1D6DUN2_MAIZE; Myb family transcription factor PHL5 | ||||
STRING | GRMZM2G035370_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 3e-09 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G035370_P03 |