PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G033138_P03
Common NameLOC100275240
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-PHD
Protein Properties Length: 527aa    MW: 59935.6 Da    PI: 8.134
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G033138_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.64.9e-09441484952
                        HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
           Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                        +  +e+L ++F++n  p ++ +e L+++lg++ +++  WF+N R
  GRMZM2G033138_P03 441 PAAVEVLRRAFAENELPPRDVKENLSRELGISFEKIDKWFKNTR 484
                        67799*************************************99 PP
2PHD27.95.3e-10187241150
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                        +C+ C++  s  ++++++C+g Ck+++H kCl+++l+++  p +   wlC+ C +
  GRMZM2G033138_P03 187 MCSTCKSheSFPSNKIIFCKGpCKRACHEKCLEPPLNKSVLPTSshGWLCKFCLC 241
                        6******65555*******977***************999999999*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.76E-11180244IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-10184242IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.623185242IPR019787Zinc finger, PHD-finger
SMARTSM002490.0018187240IPR001965Zinc finger, PHD-type
PfamPF006281.5E-7187241IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:1.10.10.604.1E-11426484IPR009057Homeodomain-like
SuperFamilySSF466895.99E-10427492IPR009057Homeodomain-like
SMARTSM003894.1E-9430494IPR001356Homeobox domain
PROSITE profilePS5007111.855430490IPR001356Homeobox domain
CDDcd000861.37E-8434494No hitNo description
PfamPF000461.4E-6441484IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MHSSENKLGW NETSMGLVPV PKRPARPDAS HQCKSDSFMK RSPRKVRNAT LAKSIKSKYH  60
YSPLKQRKGS DSVPGKIVTG LTARKKKKRK IQITDEATRL ERRARYFLIK IKLEQNLLDA  120
YSGDGWNGQS REKIKPEKEL QRARKQIIKC KIAIRDIIRQ LDLYTSTGSV DDPLMPTDQS  180
TNPEHTMCST CKSHESFPSN KIIFCKGPCK RACHEKCLEP PLNKSVLPTS SHGWLCKFCL  240
CKVRILETIN AHLGTSFTVK CHFEDIFKET TELIDSEDAL DEDWLSEYSG DEDYDPDENE  300
ASGDCMDSGE KIMSDDSNGS GSPLYSPNDD IPDFISADLN VVEGFCHTNL DLGIDAVEDD  360
FAQILTYQRP RRDVDYRRLN EEMFGKITGN EEQSEDEDWG HERRKKRTHS GVAGDNSVGF  420
LNVISDEKSQ KKGRKLFRIP PAAVEVLRRA FAENELPPRD VKENLSRELG ISFEKIDKWF  480
KNTRCAALRD RKAEGNSHNT APSKSSKNKG KAGISDWKEW SCYWSLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388RKKKKR
28389RKKKKRK
38489KKKKRK
4404408KKRTH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.288450.0cell culture| ear| embryo| endosperm| meristem| ovary| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G033138
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G033138_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9489540.0EU948954.1 Zea mays clone 391409 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357958.10.0uncharacterized protein LOC100275240 isoform 1
TrEMBLC5XUM80.0C5XUM8_SORBI; Uncharacterized protein
STRINGGRMZM2G033138_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.27e-89pathogenesis related homeodomain protein A