PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G031983_P01 | ||||||||
Common Name | GATA15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GATA | ||||||||
Protein Properties | Length: 370aa MW: 39512.8 Da PI: 9.7009 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.1 | 2.8e-19 | 191 | 224 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + GRMZM2G031983_P01 191 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 224 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.3E-19 | 185 | 237 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-12 | 188 | 225 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-15 | 189 | 224 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.466 | 189 | 221 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.87E-15 | 190 | 222 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 191 | 216 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.3E-17 | 191 | 224 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MSTVFMTQLP RTLRLMEGEQ DQGLFPASTF HVAKDPPILF PFMITSPVHV DQLQGQSSYG 60 DQHLGQHVLS ESTQQFTDRT MISGSEVFPR RPSPFGQTIQ SIDGDMIQPS AYDPYDIVEN 120 QRTEGLSGGG WTVSSSSSSP PAKMKIMRKA TSEYPEGGAA RKPRRRAQAH QDESQLLTMQ 180 QQAMGVVVRV CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAMVAA AAAAAASNGG 240 APPQAVSGVA TQQQPKPKPA RKEKRSDAAD RSLPFKKRCK MVVVDHAAGA AAATATPEAA 300 AARSTKDQAD HVSGDKQVVA PAAAMRSLDQ SEIATPPPSA VSSFHAAFPA DEITDAAMLL 360 MTLSCGLVRS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G031983 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low levels, in roots. {ECO:0000269|PubMed:23548780}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G031983_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728050 | 0.0 | KJ728050.1 Zea mays clone pUT6196 C2C2-GATA transcription factor (GATA15) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645645.1 | 0.0 | putative GATA transcription factor 22 isoform X2 | ||||
Swissprot | Q6YW48 | 1e-104 | CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 | ||||
TrEMBL | A0A060CYH3 | 0.0 | A0A060CYH3_MAIZE; C2C2-GATA transcription factor (Fragment) | ||||
STRING | GRMZM2G031983_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 4e-18 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G031983_P01 |
Entrez Gene | 103627102 |
Publications ? help Back to Top | |||
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