PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G030272_P01 | ||||||||
Common Name | LOC100280812, Zm.125169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 214aa MW: 23275.7 Da PI: 8.9124 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.1 | 2.8e-21 | 30 | 91 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYG K++++++fpr YYrCt++ +Cp++k+v+++ ++dp + +tY ++H ++ GRMZM2G030272_P01 30 NDGHQWRKYGEKKINNTNFPRYYYRCTYKdnmNCPATKQVQQKdHSDPPLYAVTYYNDHSCN 91 8***************************99999*******8752679************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-23 | 16 | 91 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-22 | 23 | 91 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.283 | 24 | 93 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.9E-31 | 29 | 92 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 30 | 90 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSPAPSSHHS QINSRKEKRM RKVDTFAPHN DGHQWRKYGE KKINNTNFPR YYYRCTYKDN 60 MNCPATKQVQ QKDHSDPPLY AVTYYNDHSC NSAFLPLSPS EFQLQTSSGK AVSICFDSSS 120 GTAAAAAATT NASGGSPSSS AAAAAARRGT PPEVSNPPVL RRSETYPWGA GAVEQKPASC 180 STEYHDAFSA GAAAVPEEVV DAGRFGSIRF FHFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 8e-14 | 30 | 90 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.125169 | 0.0 | meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G030272 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G030272_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953954 | 0.0 | EU953954.1 Zea mays clone 1450347 WRKY55 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147204.1 | 1e-160 | WRKY55 - superfamily of TFs having WRKY and zinc finger domains | ||||
TrEMBL | B6SMI9 | 1e-158 | B6SMI9_MAIZE; WRKY55-superfamily of TFs having WRKY and zinc finger domains | ||||
STRING | GRMZM2G030272_P01 | 1e-159 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 | Representative plant | OGRP14116 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 4e-19 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G030272_P01 |
Entrez Gene | 100280812 |
Publications ? help Back to Top | |||
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