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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G028980_P01 |
Common Name | ARF16, ZEAMMB73_859793 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
ARF |
Protein Properties |
Length: 914aa MW: 100943 Da PI: 6.0266 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G028980_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 75.7 | 5.2e-24 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g+ W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F
GRMZM2G028980_P01 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfnQQPPA--QELIAKDLHGNDWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 221
99*****************************8444443..48************************************************.. PP
SSSEE..EEEEE-S CS
B3 86 grsefelvvkvfrk 99
++++ +l+++++r+
GRMZM2G028980_P01 222 WNDNNQLLLGIRRA 235
7777778***9997 PP
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2 | Auxin_resp | 119.3 | 3.1e-39 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
GRMZM2G028980_P01 260 AAHAASTNSRFTIFYNPRASPCEFVIPMAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
79*********************************9789******************************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 914 aa
Download sequence Send
to blast |
MKLSPSASGG LQDQPASPEE AEEHKCLNSE LWHACAGPLV SLPSVGSRVV YFPQGHGEQV 60 AASTNKEMEA QIPNYPSLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP 120 AELGTASNQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFNQQPP AQELIAKDLH 180 GNDWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT 240 VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPMAKY VKAVYHTRIS 300 VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL 360 WEIEPLTTFP MYPSPFALGL KRPWPAGLPS LYGGRGDGLT SSLMWLRDRA NPGFQSLNFS 420 GLGMSPWMQP RLDNSLLGLQ SDMYQTIAAA AALQSTTKQV PPSAMQFQQP QNIADRSALL 480 SSQILQQVQP RFQQIYPQNL NENKIQGHTQ PEYLQVQQQL QRCQSFNEQK PPMHPQQQQQ 540 EPQQQQCVQT PQDQQMQEQK HLHNFHSLPD ALSAFSQLSP ATHSPPSALQ TVPAFSHQQN 600 FPDTNISSLS PSTGPSMHGM LGRLPSEAAS SLPCVAMNAP VSVSDPWSSK RVAVESVNPC 660 RPHVSPHIEH LDMATCNMPQ SSALAPLPGR ECLVDEDGCS DPQNHLLFGV HIDSHSLLMQ 720 GGIPALQNDN SSGTIPYSTS NFLSPSENDF PLNQPLRSAG CLDESDYLPC AENAEQANQQ 780 FATFVKVYKS GTVGRLLDIT RFSSYDELRS EVGRLFGLEG QLEDPLRSGW QLVFVDREDD 840 VLLVGDDPWQ EFVNSVSCIK ILSPEEVQRM GKPGIQLLSS APSRRLGNGC DSYASMQEPR 900 GLDAGMAPVG SVEF
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727740 | 0.0 | KJ727740.1 Zea mays clone pUT5681 ARF transcription factor (ARF16) mRNA, partial cds. |