PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G028594_P01 | ||||||||
Common Name | LOC100193074, Orphan243, ZEAMMB73_208947 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | DBB | ||||||||
Protein Properties | Length: 375aa MW: 40113.6 Da PI: 4.8627 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.6 | 4.4e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ e++ C ++ lC C +e H H++vpl GRMZM2G028594_P01 4 QCNACGAAEARVLCCADEAALCVACDEEVHAAnklagkHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 29.3 | 1.8e-09 | 62 | 94 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 +kC+ ++e +fC +++ llC+dC +++H GRMZM2G028594_P01 62 VPKCDICQEASGYFFCLEDRALLCRDCDVAIHT 94 589****************************93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.708 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.53E-9 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 2.0E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.4E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.2E-16 | 60 | 107 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.7E-7 | 63 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.58E-9 | 63 | 107 | No hit | No description |
PROSITE profile | PS50119 | 8.745 | 65 | 107 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0004006 | anatomy | mesophyll cell | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MKIQCNACGA AEARVLCCAD EAALCVACDE EVHAANKLAG KHQRVPLLTD AAAAAAAAAP 60 AVPKCDICQE ASGYFFCLED RALLCRDCDV AIHTVNSFVS VHQRFLLTGV QVGLDPADPV 120 PPIAEKHVNA VGGSVNQPVR HQPRRSPTVQ FSVEGSASVP TKNVTNGDCS RQNFVPTARA 180 EVVDWTMNNS TIRSVESPPK YISEESPTLL QSSQTTTVFS NQINGNSDGA YHLSFSGGNV 240 TDSLPDWPVD EFFSNSEYGP NFGFSENGSS KGDTAKLGGA GGSPQCRLAE GSVAEELLGQ 300 VPGLITDEYM GRVPENSWTV PEVPSPPTAS GLNWHGNLCF PAYDSTMFVP EITSLQNSQS 360 HFTVPSSFKR RRREY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.81436 | 0.0 | aerial organ| endosperm| glume| meristem| ovary| pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G028594 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G028594_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035233 | 0.0 | BT035233.1 Zea mays full-length cDNA clone ZM_BFb0047A02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131712.1 | 0.0 | uncharacterized protein LOC100193074 | ||||
TrEMBL | B4FDP5 | 0.0 | B4FDP5_MAIZE; Orphans transcription factor | ||||
STRING | GRMZM2G028594_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 1e-56 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G028594_P01 |
Entrez Gene | 100193074 |