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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G028041_P01 |
Common Name | HB132, rs1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
TALE |
Protein Properties |
Length: 351aa MW: 38800.6 Da PI: 6.8916 |
Description |
TALE family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G028041_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 30 | 8.8e-10 | 277 | 312 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++e+ LA+++gL+++q+ +WF N+R ++
GRMZM2G028041_P01 277 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 312
4679*****************************885 PP
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2 | ELK | 37.8 | 4e-13 | 232 | 253 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK qLl+KYsgyL+sL+qEFs
GRMZM2G028041_P01 232 ELKYQLLKKYSGYLSSLRQEFS 253
9********************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001708 | Biological Process | cell fate specification |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010051 | Biological Process | xylem and phloem pattern formation |
GO:0010089 | Biological Process | xylem development |
GO:0005634 | Cellular Component | nucleus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MDQSFGNLGA GAGSSSGGSN SKAAAAAVSS SSFLQLPLST ASPAYYGAPL ALLHHAAAAP 60 SSSQQHQQQQ HHHHYARHGA EMSAAEAEAI KAKIVAHPQY SALLAAYLDC QKVGAPPDVL 120 ERLTAMAAKL DARPPGRHEP RDPELDQFME AYCNMLVKYR EELTRPIDEA MEFLKRVEAQ 180 LDCISGGGGS SSARLSLADG KSEGVGSSED DMDPNGREND PPEIDPRAED KELKYQLLKK 240 YSGYLSSLRQ EFSKKKKKGK LPKEARQKLL HWWELHYKWP YPSETEKIAL AESTGLDQKQ 300 INNWFINQRK RHWKPSEDMP FVMMEGFHPQ NAAALYMDGP FMADGMYRLG S
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem in a circular pattern preceding leaf initiation, but is not detectable in leaf primordia or mature leaves in normal plants. Rings of RS1 expression subtend leaf insertion sites in the shoot, and lateral organ primordia in inflorescence and floral meristems. |
Functional Description ? help
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Source |
Description |
UniProt | Plays a possible role in patterning the placement of lateral organs along the axis of the shoot. Mutations in RS1 alters cell fate and causes unregulated cell division and expansion in the leaf. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT033361 | 0.0 | BT033361.1 Zea mays full-length cDNA clone ZM_BFb0146E21 mRNA, complete cds. |