![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G027697_P01 | ||||||||
Common Name | Zm.13902 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 31898.3 Da PI: 4.9848 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.1 | 5.5e-20 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+llv++v+q+G g+W+++a+ g++R++k+c++rw +yl GRMZM2G027697_P01 16 KGPWTAQEDKLLVEYVRQHGEGRWNSVAKLTGLKRSGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++++++++G++ W+tIar ++ gRt++++k++w+++ GRMZM2G027697_P01 69 RGKITPQEESVILQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 113 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.652 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-17 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-19 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.67E-13 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.475 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-24 | 71 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.03E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MDGQFGWGRE EGGWRKGPWT AQEDKLLVEY VRQHGEGRWN SVAKLTGLKR SGKSCRLRWV 60 NYLRPDLKRG KITPQEESVI LQLHALWGNR WSTIARSLPG RTDNEIKNYW RTHFKKAKPS 120 KNVERARARF LKQRREMQSQ LLLLQGQDQH RQEEEQPDHD DDGASEATPG VPLEEEEEQQ 180 QQQHEDLRMM LQQDMDDLLF QFCPMASCTS SSCLLPGGGS CASVVSASAS EDGSSGDHQL 240 DGAATWGWGS LWNLDDVVDD VDGGAWDSSF SFLQDQGLAF Y |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 16 | 116 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G027697 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G027697_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK099283 | 1e-137 | AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence. | |||
GenBank | AK111807 | 1e-137 | AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645936.1 | 0.0 | myb-related protein 308 | ||||
TrEMBL | A0A1D6HD91 | 0.0 | A0A1D6HD91_MAIZE; R2R3MYB-domain protein | ||||
STRING | GRMZM2G027697_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13480.1 | 8e-66 | myb domain protein 79 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G027697_P01 |
Entrez Gene | 541726 |
Publications ? help Back to Top | |||
---|---|---|---|
|