PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G027333_P01 | ||||||||
Common Name | LOC100278452, ZEAMMB73_071804, Zm.31196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 468aa MW: 50452.7 Da PI: 8.0201 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.3e-06 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H GRMZM2G027333_P01 83 FVCEICGKGFQRDQNLQLHRRGH 105 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.39E-7 | 82 | 105 | No hit | No description |
SMART | SM00355 | 0.012 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 83 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.614 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 126 | 156 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.39E-7 | 156 | 181 | No hit | No description |
SMART | SM00355 | 160 | 161 | 181 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MFHHQQELLQ AEAAAADRES SMSNLTSSTS GGPNAAPAAA AAAPPAPAAS GNNKRKRSLP 60 GNPDPEAEVV ALSPATLMAT NRFVCEICGK GFQRDQNLQL HRRGHNLPWK LKQRGTGKEA 120 QRRKVYVCPE ASCVHHDPAR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY AVHSDWKAHS 180 KICGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GLNAMAAVPA QHHHHPMLFS 240 PPPTHVMQQD VALLQEHHHQ EVMQQEHCNY AMKTEMPPWP GMTYDHPLLQ PLCNAAAPQS 300 SATSTPPPPT TMQLPAAYAH LSATALLQKA AQMGATVAGA GYTQMAGAAT SATFGLGLPD 360 LQNTQQQQHQ DGEIMAGLAR TASHGRGGEE GGGGGGDGMT RDFLGLRAFS HRDILGLAGL 420 DSSCMGAIIS ASASMNCYDE PQQRAQAQAE QQQQSSNEQW HSMGSHQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-33 | 157 | 223 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 2e-33 | 157 | 223 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.31196 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G027333 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G027333_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956926 | 0.0 | EU956926.1 Zea mays clone 1577561 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348266.1 | 0.0 | uncharacterized protein LOC100278452 | ||||
Swissprot | Q8H1F5 | 1e-114 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | K7VYZ5 | 0.0 | K7VYZ5_MAIZE; Protein indeterminate-domain 9 | ||||
STRING | GRMZM2G027333_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 3e-93 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G027333_P01 |
Entrez Gene | 100278452 |
Publications ? help Back to Top | |||
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