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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G027253_P01 |
Common Name | ABI37, LOC103631075 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
B3 |
Protein Properties |
Length: 224aa MW: 25205.8 Da PI: 10.3277 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G027253_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 81.2 | 1e-25 | 28 | 125 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+kv tpsdv+k++rlv+pk+fae+h +++ l + d + g+ W+++++y+ +s++yv+tkGW+++v++++L +gD+v F +
GRMZM2G027253_P01 28 FEKVVTPSDVGKLNRLVVPKQFAERHlplrgAAARSRGMVLCFHDdaRGGEAWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVAFCR- 118
99***************************984445578889999876777***************************************94. PP
SSSEE..EE CS
B3 86 grsefelvv 94
++++l++
GRMZM2G027253_P01 119 --DGARLFI 125
..4455555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MALTTLTLEL ESAAGDYSHS HSRRERMFEK VVTPSDVGKL NRLVVPKQFA ERHLPLRGAA 60 ARSRGMVLCF HDDARGGEAW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA GDTVAFCRDG 120 ARLFIDCQRR RRTTTRRSGS EGAVVLPAPA IGAAVPPMCQ LQMTVVFPAG QHQQAAVAMK 180 KETAAAQQED DNEVQRRRGR CLRLFGVNLL DELRTEPLLL DLQL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 1e-40 | 24 | 130 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-40 | 24 | 130 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ726965 | 0.0 | KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds. |