PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G027068_P01 | ||||||||
Common Name | bHLH48, Zm.9989 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 263aa MW: 27153.6 Da PI: 7.0499 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.7e-11 | 67 | 113 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e+E+rRR+ri+s +++Lr +l + +K +Ka+ L kAve +++L GRMZM2G027068_P01 67 RNHREAEKRRRERIKSHLDRLRNVLACD-----PKIDKASLLAKAVERVRDL 113 78************************98.....7*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.821 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-9 | 67 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-11 | 67 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-10 | 68 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-8 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MFPVEVSALA AGGAGAGRQA AGDAAGTMLP PFFMGSIWPA TAGAAGSEED EAAAAAAAHD 60 RALAASRNHR EAEKRRRERI KSHLDRLRNV LACDPKIDKA SLLAKAVERV RDLKQRAAGV 120 GEAAPAHLFP TEHDEIVVLA SGSGAVFEAS VCCDDRSDLL PDLIETLRAL RLRTLRSEMA 180 TLGGRVRNVL VLARDVVDGG GGAVAGGDDG YGGRAADSAG GATDGGGGDF LKEALRALVE 240 RPGAAGDRPK RRRVSDMNMQ AAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 249 | 253 | KRRRV |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G027068 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G027068_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727966 | 0.0 | KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354129.1 | 0.0 | uncharacterized protein LOC100285058 | ||||
TrEMBL | A0A060D1T9 | 0.0 | A0A060D1T9_MAIZE; BHLH transcription factor (Fragment) | ||||
STRING | GRMZM2G027068_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9578 | 30 | 39 |
Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 3e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G027068_P01 |