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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G026643_P02 | ||||||||
Common Name | HDZIV1_OCL1, Zm.224 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 803aa MW: 85946.2 Da PI: 5.3013 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 70 | 2.8e-22 | 103 | 158 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+lgL+ rqVk+WFqNrR+++k GRMZM2G026643_P02 103 KKRYHRHTPQQIQELEALFKECPHPDEKQRGELSKRLGLDPRQVKFWFQNRRTQMK 158 678899***********************************************999 PP | |||||||
2 | START | 186.4 | 1.5e-58 | 312 | 545 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT-S.. CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv......dsgealrasgvvdmvla.llveellddkeqWdetla.. 77 ela +a++elvk+a+++ep+W s + +n +e+ +f++s + + +ea+r+sg+v+ + lve+l+d++ +W+ ++ GRMZM2G026643_P02 312 ELAISAMDELVKLAQVDEPLWLPSLsgspdkKLLNFEEYAHSFSPSVGavkpvgYVSEASRESGLVIIDNSlALVETLMDVR-RWSDMFScm 402 57889*****************999899988888999999999998779*****************9876658999999999.********* PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEEE CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgilie 155 ka++le ++sg gal lm+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d ++++++ +++ +R+++lpSg++++ GRMZM2G026643_P02 403 iaKATVLEEVTSGiagsrnGALLLMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDglVRDHNSGtasNAGNIRCRRLPSGCVMQ 494 **************************************************************965566666677899*************** PP EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++ng++kvtwve ++++++++h+l+r+l++sgla+ga++w+a lqrqce+ GRMZM2G026643_P02 495 DTPNGYCKVTWVEYTEYDEASVHQLYRPLIRSGLAFGARRWLAMLQRQCEC 545 *************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 88 | 160 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-21 | 88 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.285 | 100 | 160 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-21 | 101 | 164 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.42E-20 | 102 | 160 | No hit | No description |
Pfam | PF00046 | 9.5E-20 | 103 | 158 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 135 | 158 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 47.244 | 303 | 548 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.89E-31 | 305 | 545 | No hit | No description |
CDD | cd08875 | 1.45E-114 | 307 | 544 | No hit | No description |
SMART | SM00234 | 2.2E-45 | 312 | 545 | IPR002913 | START domain |
Pfam | PF01852 | 3.2E-51 | 313 | 545 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.99E-21 | 565 | 769 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0004006 | anatomy | mesophyll cell | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MSFGSLFDGG SGGGGGGGGM QFPFSTGFSS SPALSLGLEN PGGGMVGRML PVGGAPAAGG 60 MARDAADAEN DSRSGSDHLD AMSAGAGAED EDDAEPGNPR KRKKRYHRHT PQQIQELEAL 120 FKECPHPDEK QRGELSKRLG LDPRQVKFWF QNRRTQMKTQ LERHENALLK QENDKLRAEN 180 MAIREAMRSP MCGSCGSPAM LGEVSLEEQH LCIENARLKD ELNRVYALAT KFLGKPMPVL 240 SGPMLQPNLS LPMPSSSLEL AVGGLRGLGS IPSLDEFAGG VSSPLGTVIT PARATGSAPP 300 PMVGVDRSML LELAISAMDE LVKLAQVDEP LWLPSLSGSP DKKLLNFEEY AHSFSPSVGA 360 VKPVGYVSEA SRESGLVIID NSLALVETLM DVRRWSDMFS CMIAKATVLE EVTSGIAGSR 420 NGALLLMKAE LQVLSPLVPI REVTFLRFCK QLAEGAWAVV DVSIDGLVRD HNSGTASNAG 480 NIRCRRLPSG CVMQDTPNGY CKVTWVEYTE YDEASVHQLY RPLIRSGLAF GARRWLAMLQ 540 RQCECLAILM SPDTVSANDS SVITQEGKRS MLKLARRMTE NFCAGVSASS AREWSKLDGA 600 AGSIGEDVRV MARKSVDEPG EPPGVVLSAA TSVWVPVAPE KLFNFLRDEQ LRAEWDILSN 660 GGPMQEMANI AKGQEHGNSV SLLRASAMSA NQSSMLILQE TCTDASGSMV VYAPVDIPAM 720 QLVMNGGDST YVALLPSGFA ILPDGPSSVG AEHKTGGSLL TVAFQILVNS QPTAKLTVES 780 VETVNNLIFC TIKKIKTALQ CDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 104 | PRKRKKR |
2 | 99 | 103 | RKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.224 | 0.0 | ear| embryo| meristem| ovary| pericarp| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G026643 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G026643_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064453 | 0.0 | BT064453.1 Zea mays full-length cDNA clone ZM_BFc0170E20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105493.1 | 0.0 | outer cell layer 1 | ||||
Swissprot | Q6EPF0 | 0.0 | ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5 | ||||
TrEMBL | C0P834 | 0.0 | C0P834_MAIZE; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
STRING | GRMZM2G026643_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G026643_P02 |
Publications ? help Back to Top | |||
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