PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G026643_P01
Common NameZm.224
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 702aa    MW: 75607 Da    PI: 5.4629
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G026643_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.32.4e-22103158156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++eLe+lF+++++p++++r eL+k+lgL+ rqVk+WFqNrR+++k
  GRMZM2G026643_P01 103 KKRYHRHTPQQIQELEALFKECPHPDEKQRGELSKRLGLDPRQVKFWFQNRRTQMK 158
                        678899***********************************************999 PP
2START186.81.1e-583125451206
                        HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT-S.. CS
              START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv......dsgealrasgvvdmvla.llveellddkeqWdetla.. 77 
                        ela +a++elvk+a+++ep+W  s       + +n +e+  +f++s +      + +ea+r+sg+v+ +    lve+l+d++ +W+ ++   
  GRMZM2G026643_P01 312 ELAISAMDELVKLAQVDEPLWLPSLsgspdkKLLNFEEYAHSFSPSVGavkpvgYVSEASRESGLVIIDNSlALVETLMDVR-RWSDMFScm 402
                        57889*****************999899988888999999999998779*****************9876658999999999.********* PP

                        ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEEE CS
              START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgilie 155
                          ka++le ++sg      gal lm+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d  ++++++    +++ +R+++lpSg++++
  GRMZM2G026643_P01 403 iaKATVLEEVTSGiagsrnGALLLMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDglVRDHNSGtasNAGNIRCRRLPSGCVMQ 494
                        **************************************************************965566666677899*************** PP

                        EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        +++ng++kvtwve ++++++++h+l+r+l++sgla+ga++w+a lqrqce+
  GRMZM2G026643_P01 495 DTPNGYCKVTWVEYTEYDEASVHQLYRPLIRSGLAFGARRWLAMLQRQCEC 545
                        *************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-2488160IPR009057Homeodomain-like
SuperFamilySSF466898.77E-2288160IPR009057Homeodomain-like
PROSITE profilePS5007118.285100160IPR001356Homeobox domain
SMARTSM003892.8E-21101164IPR001356Homeobox domain
CDDcd000863.38E-20102160No hitNo description
PfamPF000468.0E-20103158IPR001356Homeobox domain
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PROSITE profilePS5084847.244303548IPR002913START domain
SuperFamilySSF559611.95E-31305545No hitNo description
CDDcd088751.42E-115307544No hitNo description
SMARTSM002342.2E-45312545IPR002913START domain
PfamPF018522.5E-51313545IPR002913START domain
SuperFamilySSF559615.86E-10565673No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MSFGSLFDGG SGGGGGGGGM QFPFSTGFSS SPALSLGLEN PGGGMVGRML PVGGAPAAGG  60
MARDAADAEN DSRSGSDHLD AMSAGAGAED EDDAEPGNPR KRKKRYHRHT PQQIQELEAL  120
FKECPHPDEK QRGELSKRLG LDPRQVKFWF QNRRTQMKTQ LERHENALLK QENDKLRAEN  180
MAIREAMRSP MCGSCGSPAM LGEVSLEEQH LCIENARLKD ELNRVYALAT KFLGKPMPVL  240
SGPMLQPNLS LPMPSSSLEL AVGGLRGLGS IPSLDEFAGG VSSPLGTVIT PARATGSAPP  300
PMVGVDRSML LELAISAMDE LVKLAQVDEP LWLPSLSGSP DKKLLNFEEY AHSFSPSVGA  360
VKPVGYVSEA SRESGLVIID NSLALVETLM DVRRWSDMFS CMIAKATVLE EVTSGIAGSR  420
NGALLLMKAE LQVLSPLVPI REVTFLRFCK QLAEGAWAVV DVSIDGLVRD HNSGTASNAG  480
NIRCRRLPSG CVMQDTPNGY CKVTWVEYTE YDEASVHQLY RPLIRSGLAF GARRWLAMLQ  540
RQCECLAILM SPDTVSANDS SVITQEGKRS MLKLARRMTE NFCAGVSASS AREWSKLDGA  600
AGSIGEDVRV MARKSVDEPG EPPGVVLSAA TSVWVPVAPE KLFNFLRDEQ LRAEWDILSN  660
GGPMQEMANI AKGQEHGNSV SLLRASHECQ PEQHADPPGD LH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198104PRKRKKR
299103RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.2240.0ear| embryo| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G026643
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G026643_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0644530.0BT064453.1 Zea mays full-length cDNA clone ZM_BFc0170E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105493.10.0outer cell layer 1
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLC0P8340.0C0P834_MAIZE; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRINGGRMZM2G026643_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]